Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H19
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   5.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 79  RDHDFIVNLDQRGQKDLPDKNPDACADV 162
           RDH  +       Q  +PD+   AC D+
Sbjct: 618 RDHKDVTQCISCRQGTVPDETHSACRDI 645


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 115 GQKDLPDKNPDAC 153
           G  + PD+ PD C
Sbjct: 324 GLNNTPDRTPDQC 336


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 207 LDSMVLADVCKKIEENIST 151
           LDS  LAD+   + EN+S+
Sbjct: 526 LDSTELADLDISLSENLSS 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,008
Number of Sequences: 438
Number of extensions: 1319
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)