Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H18
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.40 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.40 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 GN*LETKPTTACHRSVVGPPISFLTLYCPVMEITLF 285
           GN  ET+ TT C    +   ++ + LY P + I LF
Sbjct: 730 GNAHETQITTLCVAISLSATVTLVCLYSPKIYIILF 765


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 GN*LETKPTTACHRSVVGPPISFLTLYCPVMEITLF 285
           GN  ET+ TT C    +   ++ + LY P + I LF
Sbjct: 820 GNAHETQITTLCVAISLSATVTLVCLYSPKIYIILF 855


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -1

Query: 476 VPNSSASQRHKTLIFCLV*ALNTFSTLFLPKVKVLSHLSMVFETPGCLSSGKIPKPESFV 297
           V +S++S  ++     L   LN  S+L        SHLS       C S G  P    F+
Sbjct: 253 VESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFL 312

Query: 296 P 294
           P
Sbjct: 313 P 313


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 404 STLFLPKVKVLSHLSMVFETPGCLSSGKIPKP 309
           STL +P VK+        E+   ++S   PKP
Sbjct: 388 STLNIPSVKIDEDQKCSIESITSVNSTSSPKP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,178
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)