Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H16
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    57   2e-09
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.4  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   3.2  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   7.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   7.4  
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    25   9.8  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
 Frame = +2

Query: 101 PAMILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMSIATKVAIQMNCKLG 280
           P  +  +L +NSP+ Y SIK+ C     VP+Q   ++++  +S       + +++N K+G
Sbjct: 498 PDYLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHIL-QSKPQYCANLGMKINVKVG 556

Query: 281 GAPWTV---EIPLPSL--IVIGYDVCH-DPRFKEKSYGAFVATLDKNLTQYYSAVNAHTS 442
           G   ++     PL ++  +++G DV H        S  + VA++D N  +Y +   +   
Sbjct: 557 GINCSLIPKSNPLGNVPTLILGGDVYHPGVGATGVSIASIVASVDLNGCKYTAVSRSQPR 616

Query: 443 GEELSGHMGFNIVCALKKFRERNGNLPTRIFIYRDG 550
            +E+   M   +V  L+ FR      P RI  +RDG
Sbjct: 617 HQEVIEGMKDIVVYLLQGFRAMTKQQPQRIIYFRDG 652



 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 17  SKPEIVTIRMDSATEYGNMCEATIAKRNPAMILCVLARNSPDRYESIKKKCTVDR 181
           S+ + +++  D  ++    C +   K NP +++C   +    R+  IK K   DR
Sbjct: 654 SEGQFLSVINDELSQIKEACHSLSPKYNPKILVCTTQKRHHARF-FIKNKSDGDR 707


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 183 ARSTVHFFLIDSYLSGEFLASTHKIMAGFL 94
           A +TV  F+I  ++SG   A ++K+M G L
Sbjct: 366 ATATVALFIISGFVSGYVSALSYKLMQGML 395


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   GPDEQTGNSHYTYGFGHRIWQYV*GNYSQE 96
           G DE++ +  Y + FG ++W  V G+   E
Sbjct: 565 GKDEESTSEDYNFFFGMKLWGQVIGDSDME 594


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 TVEIPLPSLIVIGYDVCH 346
           TV +PLP L+  GYD  H
Sbjct: 705 TVSVPLPELLHEGYDTFH 722


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 200 VCARNMTSKSAMSIATKVAIQMNCKLG 280
           +C       +AMS+A +VA +M+ +LG
Sbjct: 467 ICCTQPRRVAAMSVAARVAKEMDVRLG 493


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 85  YSQEKSRHDFMCTSKKFTRQVRINQKEMYSGPS 183
           Y    S++    T ++FT+ V I++K+  SGP+
Sbjct: 162 YKFMDSQNAVSVTMEEFTKAVNISKKQKSSGPN 194


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +2

Query: 107 MILCVLARNSPDRYESIKKKCTVDRAVP---TQVVCARNMTSKSAMSIATKVAIQMNCKL 277
           ++L +   + PDR   + +K      +P   +Q++C  N+TS S       V   +    
Sbjct: 2   LVLVIGDFHIPDRAPKLSEKFR-QLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVK 60

Query: 278 GGAPWTVEIPLPSLIVIG 331
           G    + + P+   I +G
Sbjct: 61  GAFDISSKAPIAGKITLG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,268
Number of Sequences: 5004
Number of extensions: 47956
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)