Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H16
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 50 2e-06
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 49 3e-06
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 48 4e-06
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 46 2e-05
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 31 0.61
08_01_0449 + 3965959-3966081,3966462-3966714,3967188-3967551,396... 31 0.81
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 29 1.9
01_05_0271 + 20276965-20278674 29 1.9
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 28 4.3
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 28 5.7
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488... 27 7.5
08_01_0057 - 383603-384256 27 7.5
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 10.0
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 49.6 bits (113), Expect = 2e-06
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Frame = +2
Query: 89 AKRNPAMILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMSIATKVAIQMN 268
A N +++CV+ R Y +K+ V TQ C + SK T +A+++N
Sbjct: 709 ASGNLQLLICVMERRHQG-YADLKRIAETSIGVVTQC-CLYSNLSKLTSQFLTNLALKIN 766
Query: 269 CKLGG------APWTVEIPLPSL-----IVIGYDVCHDPRFKEKSYG--AFVATLD-KNL 406
KLGG + + +IP L + +G DV H + S A VA+++ +
Sbjct: 767 AKLGGCNIALYSSFPCQIPRIFLSEEPVMFMGADVTHPHPLDDSSPSVVAVVASMNWPSA 826
Query: 407 TQYYSAVNAHTSGEELSGHMGFNIVCALKKFRERNGNLPTRIFIYRDG 550
+Y S + + T +E+ + L++F + G LP+RI +RDG
Sbjct: 827 NKYISRMRSQTHRKEIIEQLDVMAGELLEEFLKEVGKLPSRIIFFRDG 874
>03_06_0327 - 33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 48.8 bits (111), Expect = 3e-06
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Frame = +2
Query: 110 ILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMSIATKVAIQMNCKLGGAP 289
+L V+ Y IK+ C D + +Q C S+ VA+++N K+GG
Sbjct: 679 LLIVILPEVSGSYGKIKRVCETDLGIVSQC-CLPRHASRPNKQYLENVALKINVKVGGRN 737
Query: 290 WTVE-------IPLPS---LIVIGYDVCHDPRFKEK--SYGAFVATLD-KNLTQYYSAVN 430
+E IP S I+ G DV H P ++ S A VA++D +T+Y V+
Sbjct: 738 TVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVASMDWPEITKYRGLVS 797
Query: 431 AHTSGEELSGHM------------GFNIVCALKKFRERNGNLPTRIFIYRDG 550
A +E+ + G I L FR++ G P RI YRDG
Sbjct: 798 AQPHRQEIIEDLFSVGKDPVKVVNGGMIRELLIAFRKKTGRRPERIIFYRDG 849
>03_05_0704 - 26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 48.4 bits (110), Expect = 4e-06
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 25/172 (14%)
Frame = +2
Query: 110 ILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMSIATKVAIQMNCKLGGAP 289
+L V+ Y IK+ C + V TQ CA K +A++MN K+GG
Sbjct: 580 LLIVILTEISGSYGRIKRICETEVGVITQC-CAPKSLQKGGKQYLENLALKMNVKVGGRN 638
Query: 290 WTVE------IPLPS---LIVIGYDVCHDPRFKEKS--YGAFVATLD-KNLTQYYSAVNA 433
+E IP+ + IV G DV H ++ S A VA++D +T+Y V+
Sbjct: 639 TVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVST 698
Query: 434 HTSGEELSGHM-------------GFNIVCALKKFRERNGNLPTRIFIYRDG 550
+ EE+ ++ G I L+ F + G P+RI YRDG
Sbjct: 699 QSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSRIIFYRDG 750
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 46.0 bits (104), Expect = 2e-05
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Frame = +2
Query: 80 ATIAKRNPAMILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMS-IATKVA 256
A K+ ++ C ++ P Y+++K C + TQ + + + +A
Sbjct: 679 AASKKQKLQLLFCPMSDQHPG-YKTLKLICETQLGIQTQCFLSFLANKQQGQDQYMSNLA 737
Query: 257 IQMNCKLGGAPWTV---EIPLPS---LIVIGYDVCHDP--RFKEKSYGAFVATLDKNLTQ 412
+++N K+GG+ + +P S + IG DV H + S A VA++D+ ++
Sbjct: 738 LKINGKIGGSNIQLFGESLPRISGAPYMFIGADVNHPSPGNVESPSIAAVVASVDQGASK 797
Query: 413 YYSAVNAHTSGEELSGHMGFNIVCALKKFRERNGNLPTRIFIYRDG 550
Y + A E+ H+G + F +RN P RI +RDG
Sbjct: 798 YVPRIRAQPHRCEVIQHLGDMCKELIGVFEKRNRVKPQRIIYFRDG 843
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 31.1 bits (67), Expect = 0.61
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Frame = +2
Query: 110 ILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMTSKSAMSIATKVAIQMNCKLGGAP 289
+L V+ Y IK+ C D + +Q C S+ VA+++N K
Sbjct: 472 LLIVILLEVSGSYGKIKRVCENDLGIVSQC-CLPRHASRPNKQYLENVALKINVK----- 525
Query: 290 WTVEIPLPSLIVIGYDVCHDPRFKEK--SYGAFVATLD-KNLTQYYSAVNAHTSGEELSG 460
+ SL+++ H P ++ S A VA++D +T+Y V+A + +E+
Sbjct: 526 ---KSQQSSLVLMS----HTPPGEDSASSIAAVVASMDWPEITKYRGLVSAQSHRQEIIE 578
Query: 461 HM------------GFNIVCALKKFRERNGNLPTRIFIYRDG 550
+ G I L FR++ G P RI YRDG
Sbjct: 579 DLFSVGKDPVKVVNGGMIREFLIAFRKKTGRRPERIIFYRDG 620
>08_01_0449 +
3965959-3966081,3966462-3966714,3967188-3967551,
3967642-3967860,3969106-3969241,3970095-3970346,
3970459-3970752
Length = 546
Score = 30.7 bits (66), Expect = 0.81
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 329 GYDVCHD--PRFKEKSYGAFVATLDKNLTQYYSAVNAHTSGEEL 454
GYDV D FK+K G+FVA ++L Y+A T GE++
Sbjct: 120 GYDVSSDIFQHFKDKE-GSFVADDTRSLLSLYNAAYMRTHGEKV 162
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 329 GYDVCHD--PRFKEKSYGAFVATLDKNLTQYYSAVNAHTSGEEL 454
GYDV D FK+K G+FVA ++L Y+A T GE++
Sbjct: 80 GYDVSSDMFQHFKDKE-GSFVADDVRSLLSLYNAAFLRTHGEKV 122
>01_05_0271 + 20276965-20278674
Length = 569
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +2
Query: 44 MDSATE-YGNMCEATIAKRNPAMILCVLARNSPDRYESIKKKCTVDRAVPTQVVCARNMT 220
MDS +GN+ +A + + + + + + ++ C R P ++ A ++
Sbjct: 271 MDSGHSLFGNLLDADLVTWSSLITGLLHICKYEESFGLFRQMCNSGRR-PDSILVA-SLL 328
Query: 221 SKSAMSIATKVAIQMNCKLGGAPWTVEIPLPSLIVIGYDVCHDPRFKEKSYGAFVATLDK 400
S A + + +++C +I + S ++ Y C F + +YG F DK
Sbjct: 329 SACASMVNISYSKEIHCYAFRVGAHTDIRVSSSLMDAYSKCG---FADLAYGVFFQMPDK 385
Query: 401 NLTQYYSAVN 430
NL Y + ++
Sbjct: 386 NLVMYNTVIS 395
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 65 GNMCEATIAKRNPAMILCVLARNSPDRYESIKKKCTVDRAVP 190
GN+C T + +LC + RN S T+ R+VP
Sbjct: 2 GNVCVGTTCSLSKNGLLCAIWRNGSTTTSSTPSHPTISRSVP 43
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 348 SWHTSYPMTMSEGNGISTVHGAPP----NLQFICMATFVAIDIADLLVI 214
SW S +T+ +G G+ HGA L+F C+ +F + +A+ ++
Sbjct: 822 SWSPSLVITLHKGRGMDAKHGAKSVDNGRLKF-CLQSFASFSVANRTIM 869
>09_02_0140 +
4879319-4879968,4881443-4881942,4884230-4884368,
4886005-4886156,4886267-4886532,4886902-4887028,
4887111-4887179,4887270-4887518,4887636-4888012
Length = 842
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 129 EIHQTGTNQSKRNVQWTELYRLKL 200
E H G + +KRN+ WTE R+ L
Sbjct: 607 EEHIAGRDHNKRNLTWTERLRIAL 630
>08_01_0057 - 383603-384256
Length = 217
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 26 EIVTIRMDSATEYGNMCEATIAKRNPAMILCVLARNSPDRYESIKKKCTV 175
++ T+ + + EY +C+A ++ P LA R E++ K C+V
Sbjct: 153 DLATVHVSAGAEYPQVCKALFRRQRPGAYPAELAA----REEALNKLCSV 198
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 334 ISDDDERRQRYLNGPRGTSQLTVHLYGHLCCNRHRG 227
I D+ + R L R LT+ ++GH CCN G
Sbjct: 386 IEDNLDLRIHGLASVRRLKNLTLAMHGHNCCNTDYG 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,929
Number of Sequences: 37544
Number of extensions: 325166
Number of successful extensions: 787
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -