Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H15
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.6  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   6.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 39  DTKTHAKMCDDDVAALVVDNGSGMCKAGFAGD 134
           D K    + D D    + D   GMCK G +GD
Sbjct: 110 DLKLDNVLLDQDGHIKIAD--FGMCKEGISGD 139


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 34  VPTQKHTPKCAT 69
           VP+ KH  KCAT
Sbjct: 160 VPSVKHVAKCAT 171


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 170 SPSPPGCHGRHG 205
           +P PPG  G HG
Sbjct: 331 NPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 170 SPSPPGCHGRHG 205
           +P PPG  G HG
Sbjct: 331 NPGPPGVPGDHG 342


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 71 VVAHFGVCFCVGTRWILTLR 12
          +V  FG C CVG   I  L+
Sbjct: 4  IVLIFGFCVCVGALTIEELK 23


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 170 SPSPPGCHGRHG 205
           +P PPG  G HG
Sbjct: 270 NPGPPGVPGDHG 281



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 167 GSPSPPGCHGRHGTEGLLR 223
           G P  PG HG H  +  +R
Sbjct: 272 GPPGVPGDHGDHAPKQTVR 290


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 94  TMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 204
           TM P  A  +    T LAPS+    +       +S W
Sbjct: 79  TMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,450
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)