Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H12
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.40 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   6.5  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   8.6  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 136 YSPRRTEYIVPTSLSTAPVMHVPLSAHIWDYTSATL 29
           Y+    +++ PT   T+PV  +  SA IW + SA L
Sbjct: 378 YTNLLLQHLYPTPSFTSPVNQILCSAEIWRWVSAIL 413


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 99  EVGTIYSVRLGEYDTQNDVDCLNKVCADPPQEILVQRAYPHPGYNDNNKN 248
           EV  + S  LG    Q   D     C+DP +E++++R  PH      +KN
Sbjct: 772 EVSDLSSDHLGNTVVQKLFD----YCSDPVKEMMLERIAPHLAQIGIHKN 817


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 213  YPHPGYNDNNKNRQDDIGLIRLAK-RAKYTYYVQPICXTSNNQRLAVGNDVYVAG 374
            + HPG++ NN      + L  +        Y+V  +C  + NQ+L+    +   G
Sbjct: 1352 FAHPGFHLNNMFIMLSVQLFMVVLINLGAIYHVVTVCYYNGNQKLSYDTSIVPRG 1406


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 265 PMSSCLFLLLSLYPGC 218
           PM  CL L++SL  GC
Sbjct: 16  PMFGCLLLIVSLITGC 31


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 247 FLLLSLYPGCG*ALCTRIS*GGSAQTLFKQSTSFCVSYSPRRT 119
           FLLL+ +P     L   ++   S++  FKQ  S  VS S  R+
Sbjct: 518 FLLLTSFPFAFSKLTDDVTAKSSSEETFKQYLSVLVSISEERS 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,740
Number of Sequences: 5004
Number of extensions: 33980
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)