Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H12
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0164 + 1863890-1866253                                           29   2.1  
10_05_0014 + 8018021-8019049                                           27   4.8  
01_06_1192 - 35302863-35303984,35305596-35306024                       27   4.8  

>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 160 QSTSFCVSYSPRRTEYIVPTSLSTAPVMHVPLSAHIWDYTSATL*Y 23
           QSTSF  S    R   I  ++  T  +  VPL++H+W   S TL Y
Sbjct: 563 QSTSFIKSKGSGRVVTIAASTSFTNSIP-VPLASHVWKEFSWTLHY 607


>10_05_0014 + 8018021-8019049
          Length = 342

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 315 ICXTSNNQRLAVGNDVYVAGLGENLKRAEQ 404
           +C T+   R AVG  V+ AG GE  +  ++
Sbjct: 191 VCTTNALSRAAVGRRVFAAGAGEGAREFKE 220


>01_06_1192 - 35302863-35303984,35305596-35306024
          Length = 516

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 249 CSYYCHYIRDVDRLSVLESLEVD 181
           C+YYC Y+RD+  L   +  E D
Sbjct: 466 CAYYCIYLRDIPVLDDKDDEEAD 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,210
Number of Sequences: 37544
Number of extensions: 245790
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)