Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H12
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    27   5.6  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    27   5.6  
Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    26   9.8  
Z83231-2|CAB05750.1|  357|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 105  GTIYSVRLGEYDTQNDVDCL 164
            GTIY+   G+ D +ND++C+
Sbjct: 3004 GTIYTPMFGDKDYENDLECV 3023


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 105  GTIYSVRLGEYDTQNDVDCL 164
            GTIY+   G+ D +ND++C+
Sbjct: 3004 GTIYTPMFGDKDYENDLECV 3023


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 189 QEILVQRAYPHPGYNDNNKNRQDDIGLIRLAKRA-KYTYYVQPICXTSNNQRLAVGNDVY 365
           Q   +QR + +P Y D   +   DI ++ +     ++  Y QPIC  S +     G    
Sbjct: 97  QIFYLQRIHFYPLYKDIFSH---DIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCV 153

Query: 366 VAGLGE-NLKRAEQ 404
           V+G G   L+ AE+
Sbjct: 154 VSGWGSMGLRYAER 167


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 75  CITGAVEREVGTIYSVRLGEYDTQNDVDCLNKVCADPPQEILVQRAYPHP 224
           C+T     E    + V  G  + +ND + +NK+  DP    L+ + + HP
Sbjct: 15  CMTSMTADEENICFLV--GTNNIKNDKNQVNKLFMDPEASRLMSKTFRHP 62


>Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  EREVGTIYSVRLGEYDTQNDVDCLNKVCAD 182
           ER VGT  S R+GE  T  + D  N+   D
Sbjct: 744 ERGVGTQNSARIGETQTAKNDDVANRKTVD 773


>Z83231-2|CAB05750.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.2 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 175 ARIHLKRF*YREPIHIPDIMTIIRTGKMTSVSLGL 279
           A +++K +  +E I+IP I+TII      S+SL +
Sbjct: 150 ASVYIKDYESKERIYIPIILTIISQLLSISISLAI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,273
Number of Sequences: 27780
Number of extensions: 203597
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)