Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H11
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   3.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   5.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   7.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   7.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 270 FTNINSSYGVMT*TQRRTACAPVTNSTKGPANSVQS 163
           FTN NS  G ++ +       P++NST  P ++  S
Sbjct: 587 FTNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTS 622


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 233 KRSVERLVRPSQIALKGLRILYNRIHVGHQYVAMLLPNLRSKLTFIANSSI 81
           KR   RL R     +   ++L   + + HQ  AMLL     K T +AN+S+
Sbjct: 90  KRQARRLDREENATVTANKLL--ALQMRHQ--AMLLEENNKKATALANASV 136


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 52  FNVPPGGCEAMLLLAIKVNLLRKLG-KSIATYWCPTCIRLYRIR 180
           + + PG  E++LLLA+ +    +LG ++ A  W  +  + Y  R
Sbjct: 254 YGLGPGRLESVLLLALTMEPASRLGSEADAKAWLDSVAQKYAAR 297


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 233  KRSVERLVRPSQIALKGLRILYNRIHVGHQYVAMLLPNLRSK 108
            K S+ER +R  Q  L       N   VG   + +LL NL+ K
Sbjct: 3649 KLSIERQIRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEK 3690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,018
Number of Sequences: 5004
Number of extensions: 27164
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)