Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H10
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   1.5  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   2.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   3.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    24   4.6  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    24   4.6  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.0  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    23   8.0  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 222 DIRKGSFGCFIFIRSGSKLEGKLF 151
           D+   ++ C ++ R+G K++GKLF
Sbjct: 137 DLDDQTWNCSVYGRNGIKVDGKLF 160


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 105 LKRLFHLRLWVSVLGS 58
           +++  HLR WVS LGS
Sbjct: 314 IRQKLHLRAWVSFLGS 329


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -1

Query: 246  LNFSFHTLDIRKGSFG------CFIFIRSGSKLEGKLFGLSKPVXK 127
            L F + +  +RKG +       CFI I  G +  G+ FG S  V K
Sbjct: 1038 LTFWYGSTLMRKGEYNIVQFYTCFIAIVFGIQQAGQFFGYSADVTK 1083


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 192 IFIRSGSKLEGKLFGLSKPVXKRYSXMHC-LKRLFHLRLWVSVLGSFDVMLM 40
           + ++ G      + GL +P  +  S     L RL+   LW + L  FD +L+
Sbjct: 165 LLVKPGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNLADFDDLLL 216


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 105 LKRLFHLRLWVSVLGSFDVMLMLAGG 28
           LKR F L++W+    +  + L + GG
Sbjct: 48  LKRKFMLQVWIGSFTALFICLAIGGG 73


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 105 LKRLFHLRLWVSVLGSFDVMLML 37
           L+ L H RLW+S   +  V+L L
Sbjct: 218 LRNLLHKRLWISFFFACFVVLSL 240


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 201 GCFIFIRSGSKLEGKLFGLS 142
           GC  F+R+G+K +GK  G+S
Sbjct: 3   GCS-FLRNGAKFQGKQKGVS 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,593
Number of Sequences: 5004
Number of extensions: 15604
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)