Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H09
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    29   0.57 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.0  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   5.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   7.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.3  

>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 142 FVRAVLVQSDVPITI----QTHSAPMNVHTVFLYKIHQKHPNRFPENY 11
           +V A++     PI I    Q +S P N+  + L      HPNR+ E++
Sbjct: 3   YVEAIIKAGGCPIVIYPGLQRNSIPPNIDGIILAGGESVHPNRYGEDF 50


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 460  ASKFVLYYTSSPWYWRAWSGRI 395
            AS+ VL Y S+P  W  W+ R+
Sbjct: 1115 ASQCVLEYASTPNNWEVWAPRV 1136


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -1

Query: 238 YATRWKRS*LTKQ*AAAGLCTPWKDLYARRHIFVRAVLVQSDVPITIQTHSAPMNVHTVF 59
           Y+T W RS        + L   WKD      + + +VL   D   +      P+N + ++
Sbjct: 107 YSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQM-ISSVLKYLDKVYSKSADKVPVNENGIY 165

Query: 58  LYK 50
           +++
Sbjct: 166 IFR 168


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 187 RPPPTASLVTTVSNVLHNITGFNNFPVQEWNDKGL 291
           R P + +L+T+ + + HNI      P  E N KGL
Sbjct: 240 RDPLSQTLITSCTRI-HNIVAVIESPYDEPNTKGL 273


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 278 TTRDCTAYCSGVHHGRGDNQMYRMYAPPPV 367
           T  DC        HGR +N ++R    PPV
Sbjct: 227 TPVDCELLGMDPEHGRPENLLWRYVPAPPV 256


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 163 LYARRHIFVRAVLVQSDVPITIQTHSAPMNVHTVFLYKIHQKHPN 29
           ++  R I  R  L  SDV + I   S   N  +  L+K   KH N
Sbjct: 707 MFKNRSIASRQSLETSDVTLDINMSSRHSNGTSSMLFKDFTKHNN 751


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 22  ETCLDVFGEFCTGKQYEHSLEPN 90
           +T L  FGE CTGK  E++L  N
Sbjct: 389 QTTLRAFGEICTGK-LENTLFSN 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,989
Number of Sequences: 5004
Number of extensions: 51109
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)