Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H09
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    31   0.44 
04_04_0719 + 27541129-27541520,27541607-27541965,27542061-275421...    28   4.1  
09_03_0009 + 11463049-11463063,11464136-11464492                       28   5.4  
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052     28   5.4  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   7.1  
04_04_0102 + 22804065-22804112,22804204-22804737                       27   9.4  

>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 214 TTVSNVLHNITGFNNFPVQEWNDKGLYRLLFRCTSWSRGQSDVQNVRAAACRVLYV 381
           +++S + H I  F  F  + +   GL  +++R  +W++  + +Q +R   C VL V
Sbjct: 70  SSISGLTHEIGPFQ-FAAKRYYSGGLPEIIYRPETWTKAYALIQVLRDELCMVLQV 124


>04_04_0719 +
           27541129-27541520,27541607-27541965,27542061-27542189,
           27542278-27542409,27542522-27542794,27542899-27543299,
           27543424-27543567
          Length = 609

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 291 VPLIVQVYIMVEGTIRCTECTRRRLS--RTLCVDVTQMRPDHARQ 419
           +P +VQV I ++ T  C  C+ RRLS       D   + P +A Q
Sbjct: 451 LPRLVQVAIELDRTGECRRCSVRRLSDQHARPADFPAINPSYANQ 495


>09_03_0009 + 11463049-11463063,11464136-11464492
          Length = 123

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 288 IVPLIVQVYIMVEGTIRCTECTRRRLSRTLCVDVTQMRPDHAR 416
           +VP +V+V  +V G++RC   T R  + T+C +   +   H+R
Sbjct: 66  VVPRLVEV--VVRGSLRCRSKTSRSHTSTICRESRVIYGRHSR 106


>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
          Length = 495

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 325 RGQSDVQNVRAAACRVLYVLTSHK----CVRTTLAN 420
           RG S   ++ AAA RV  VLTSH+    CV  T  N
Sbjct: 99  RGHSHRVDLAAAASRVTRVLTSHRGPYLCVHLTCCN 134


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = -3

Query: 518 RSACVRASMLIVVISSVCNGVKVCIILYKQSLVLASVVRTHLCDVNT*STRQAAARTFCT 339
           R +CV    L++  S  C G+K  +  Y++        R   C       R A  R  C 
Sbjct: 380 RGSCVETCRLVITKSCRCGGLKKEVPCYQELTCERKCQRLRNCG------RHACRRRCCE 433

Query: 338 SDC 330
            DC
Sbjct: 434 GDC 436


>04_04_0102 + 22804065-22804112,22804204-22804737
          Length = 193

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 236 CNTLETVVTNEAVGGGRPLYTMEGLIRT--SPY 144
           CN LE  VT   +G  + L+T+E  + T  SPY
Sbjct: 133 CNYLEATVTGPHLGCAQQLFTVEQWLATDASPY 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,423,972
Number of Sequences: 37544
Number of extensions: 370688
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)