Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H09
         (532 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y16535-1|CAB41449.1|  380|Homo sapiens sialidase protein.              32   1.4  
BC107053-1|AAI07054.1|  380|Homo sapiens sialidase 2 (cytosolic ...    32   1.4  
BC069151-1|AAH69151.1|  380|Homo sapiens sialidase 2 (cytosolic ...    32   1.4  
AC106876-2|AAY24360.1|  380|Homo sapiens unknown protein.              32   1.4  

>Y16535-1|CAB41449.1|  380|Homo sapiens sialidase protein.
          Length = 380

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 156 AYKSFHGVQRPA-AAYCFVSHD 218
           AY+  H +QRP  +A+CF+SHD
Sbjct: 180 AYRKLHPIQRPIPSAFCFLSHD 201


>BC107053-1|AAI07054.1|  380|Homo sapiens sialidase 2 (cytosolic
           sialidase) protein.
          Length = 380

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 156 AYKSFHGVQRPA-AAYCFVSHD 218
           AY+  H +QRP  +A+CF+SHD
Sbjct: 180 AYRKLHPIQRPIPSAFCFLSHD 201


>BC069151-1|AAH69151.1|  380|Homo sapiens sialidase 2 (cytosolic
           sialidase) protein.
          Length = 380

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 156 AYKSFHGVQRPA-AAYCFVSHD 218
           AY+  H +QRP  +A+CF+SHD
Sbjct: 180 AYRKLHPIQRPIPSAFCFLSHD 201


>AC106876-2|AAY24360.1|  380|Homo sapiens unknown protein.
          Length = 380

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 156 AYKSFHGVQRPA-AAYCFVSHD 218
           AY+  H +QRP  +A+CF+SHD
Sbjct: 180 AYRKLHPIQRPIPSAFCFLSHD 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,395,884
Number of Sequences: 237096
Number of extensions: 2054817
Number of successful extensions: 4100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4100
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)