Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H09
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL117202-26|CAE18010.1|   98|Caenorhabditis elegans Hypothetical...    27   8.4  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 327 GTIRCTECTRRRLSRTLCVDVTQMRPDHARQYQGLLV 437
           G +RC + +RRR SR +C++V + R  +   ++ L +
Sbjct: 102 GRVRCLKASRRRRSRRVCIEVEEDRVVYVFMFRSLFL 138


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 107 NNDTDTFGSNEC--SYCFPVQNSPKTSKQVS 21
           NND D   +N    SY  P+++SPKTSK  S
Sbjct: 466 NNDEDDEDNNSAGGSYTEPMRDSPKTSKSNS 496


>U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical
           protein C54D2.1 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 179 TEAGXXXXXXXSRPFPTCCIILPALITSPSRSGTTRDCTAY-CSGVHHGRGDNQMYRM 349
           TEA        + P PT   I+P  + +PSR      CT Y C+    G G  Q+ R+
Sbjct: 275 TEAPTTTFSTTTTPAPTTTFIIPTTV-APSRE--EPGCTPYNCACNPMGCGQGQIVRI 329


>Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.13 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 239 ILPALITSPSRSGTTRDCTAYCSGVHHG 322
           ++P +    S S TT DC + C G  +G
Sbjct: 24  VIPLVFPQMSNSETTSDCCSVCGGAPNG 51


>AL117202-26|CAE18010.1|   98|Caenorhabditis elegans Hypothetical
           protein Y47D3A.32 protein.
          Length = 98

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 481 SSHLFVMASKFVLYYTSSPWYWRA-WSGRIC 392
           S+ +F++ +  +LYY  +  Y+R  W GR C
Sbjct: 37  SAIIFILLAILILYYIKTSRYYRHWWRGRQC 67


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 245 PALITSPSRSGTTRDCTAYCSGVHHGRGDNQMYRM--YAPPPVAYSMC*RHTNASGPRSP 418
           PAL+ + +R+G+     A     HH      M+++  + PPP+  S      ++SG  +P
Sbjct: 642 PALMVAGNRAGSAEAAAAQMGNPHHPMMGANMWQLTPHYPPPLPAS------SSSGAGTP 695

Query: 419 IPR 427
           + R
Sbjct: 696 VSR 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,710
Number of Sequences: 27780
Number of extensions: 305653
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)