Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H09
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 245 PALITSPSRSGTTRDCTAYCSGVHHGRGDNQMYR 346
           PA   +P +  T     A C+ +HH     ++Y+
Sbjct: 448 PATTAAPPQLPTEESVDALCNTLHHWHHCPEIYK 481


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 442 YYTSSPWYW 416
           YY  S WYW
Sbjct: 276 YYVMSLWYW 284


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 495 YVDSSHLICL*WRQSLYYIIQAVLGIGERGPDAFV*RQHIEY 370
           YVD+S++I   +   L  +      +  + P+AF   +HI +
Sbjct: 811 YVDASYMIAFAYPIMLIVVCTVYAVLTRKIPEAFNESKHIGF 852


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 439 YTSSPWYWRAWSG 401
           +T+   YWR W G
Sbjct: 564 FTNYKLYWRYWQG 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,347
Number of Sequences: 438
Number of extensions: 4087
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)