Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H06
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 28 0.19
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 0.33
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 27 0.44
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 26 0.77
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 24 2.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 24 3.1
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 3.1
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 23 4.1
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 23 5.4
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 23 5.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 22 9.5
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.19
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 16 RRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSEL 138
+R R E+N+ A ++ RQKKK + L H C L
Sbjct: 269 KRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSKAL 309
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 0.33
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKK-------AEVEVLLNEEHALCSHHSELGDECSDLST 165
++R E+N+ A + RQ+KK A+VE NE L + S L +E L T
Sbjct: 473 EKRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKT 530
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 0.44
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVL 96
++R RI E+N+ A ++ RQKKK ++ L
Sbjct: 11 EKRRRILERNRIAASKFRQKKKEWIKEL 38
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 0.77
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 19 RSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSELGDE 147
R ++KE NK R Q+K +++E L+++HA + GDE
Sbjct: 47 RKQLKEGNKKQ-KRALQQKISQMEADLSQKHATERQKLDKGDE 88
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 110 TPCVHITRNLETNAPTCQREILYITGRHARPF*SLRSNQI 229
T +H+ RN + P + + I+ +RP L+SN I
Sbjct: 292 TQVLHLERNYRSAKPILELALSIISQDKSRPKKGLKSNHI 331
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 10 RDRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSELGDECSDLS 162
RD+ + + + K A+ + ++ K + + L E H+L ++ DE LS
Sbjct: 527 RDKERQEELRRKEAMQKIEEQSKRDYDKLHGEGHSLGINNVRKVDELQSLS 577
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 100 NEEHALCSHHSELGDECSDLST*DSIHHRSSCETFL 207
+E +C + EL DEC L + HR + +L
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWL 557
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 113 PCVHITRNLETNAP 154
PCVH+T N + ++P
Sbjct: 140 PCVHLTVNTDVSSP 153
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 10 RDRRSRIKEQNKNAVTR*RQKKK 78
R+++ + KEQ K T R+KKK
Sbjct: 144 REKKEQKKEQKKEKKTERRKKKK 166
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVE 90
+R+ R+KEQ + + QKK+ + E
Sbjct: 135 ERKQRLKEQREKKEQKKEQKKEKKTE 160
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKK 75
++ SRI+E+NK + RQKK
Sbjct: 485 EKASRIREKNKLTMLAARQKK 505
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 73 KKAEVEVLLNEEHALCSHHSELGDECSDLST 165
K A+V V+ N + +L S H+ S LST
Sbjct: 371 KTAQVSVMSNNQDSLKSRHTSSDSSNSLLST 401
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 127 HSELGDECSDLST*DSIHHRSSCET 201
H +G + LS DS HR SC++
Sbjct: 897 HLTVGSDAVCLSLGDSQFHRLSCDS 921
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,087
Number of Sequences: 5004
Number of extensions: 12636
Number of successful extensions: 39
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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