Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H06
         (231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    32   0.075
02_03_0162 + 15834714-15835576,15835696-15836434                       28   0.92 
02_03_0158 - 15816832-15817570,15817690-15818552                       28   0.92 
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563...    28   0.92 
05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015     27   2.1  
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    26   4.9  
05_03_0263 + 11234850-11235044,11235413-11237341                       25   6.5  
04_04_0058 - 22416949-22418196                                         25   6.5  
02_04_0313 - 21947115-21948021,21948102-21948172                       25   6.5  
04_03_0264 - 13619329-13621708,13621742-13621830                       25   8.6  

>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 34  EQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSELGDECSD-LST*DSIHHRS 189
           +Q+ NA  + R + K+   +   E+  +CS H+ +GD C + L   D  H++S
Sbjct: 81  KQSANAPGKERAELKSRESLSQKEQPEICSTHTAIGDACENKLECIDGTHNQS 133


>02_03_0162 + 15834714-15835576,15835696-15836434
          Length = 533

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 117 VFTSLGT-WRRMLRPVNVRFYTSQVVMR 197
           VFT  G  WRRM R + + F+T++VV +
Sbjct: 144 VFTEYGDHWRRMRRVMTLPFFTARVVQQ 171


>02_03_0158 - 15816832-15817570,15817690-15818552
          Length = 533

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 117 VFTSLGT-WRRMLRPVNVRFYTSQVVMR 197
           VFT  G  WRRM R + + F+T++VV +
Sbjct: 144 VFTEYGDHWRRMRRVMTLPFFTARVVQQ 171


>01_06_1154 -
           34955235-34955827,34955912-34956045,34956142-34956389,
           34956431-34956901
          Length = 481

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 117 VFTSLGT-WRRMLRPVNVRFYTSQVVMR 197
           VFT  G  WR+M R + V F+T +VV R
Sbjct: 118 VFTVYGDHWRKMRRIMTVPFFTGKVVQR 145


>05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015
          Length = 500

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 117 VFTSLGT-WRRMLRPVNVRFYTSQVVMRD 200
           VFT  G  WR+M R + V F+T++VV ++
Sbjct: 118 VFTVYGDHWRKMRRIMTVPFFTNKVVAQN 146


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 62  DGKRKRLRSKSFLTRNTPCVHITRNLETNAPTCQREILYIT 184
           +G+  RL  K     + PC+       +N P C+  I ++T
Sbjct: 170 EGESLRLLPKCSHAFHVPCIDTWLKSHSNCPLCRCNIAFVT 210


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 40  NKNAVTR*RQKKKAEVEVLLNEEHALCSHHSELGDECSDLST*DSIHHRSSC 195
           +++ VT   QK+ A + +  ++ H +  H   LGDE   ++    + H + C
Sbjct: 467 HEDVVTSAHQKRAALIVLPFHKLHQMDGHMESLGDEYQHIN--QRVLHHAPC 516


>04_04_0058 - 22416949-22418196
          Length = 415

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 62  DGKRKRLRSKSFLTRNTPCVHITRNLETNAPTCQREIL 175
           DG+  RL  K     + PC+        N P C+ ++L
Sbjct: 211 DGELVRLLPKCGHAFHVPCIDTWLRAHVNCPLCRSDVL 248


>02_04_0313 - 21947115-21948021,21948102-21948172
          Length = 325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 62  DGKRKRLRSKSFLTRNTPCVHITRNLETNAPTCQREILY 178
           DG+  RL  K     + PC+        N P C+  +L+
Sbjct: 118 DGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCRAHVLH 156


>04_03_0264 - 13619329-13621708,13621742-13621830
          Length = 822

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 116 RACSSLRRTSTSAFFFCRQRVTAFLFCSFI 27
           R+  +L   S +A FFC     AFLF  FI
Sbjct: 45  RSTQTLYGPSFAAGFFCAPPCQAFLFAVFI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,333,476
Number of Sequences: 37544
Number of extensions: 81522
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)