Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H06
(231 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 34 0.016
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 29 0.34
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 29 0.34
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 29 0.34
AF047665-2|AAP13767.1| 222|Caenorhabditis elegans Hypothetical ... 27 2.4
AF047656-9|AAC05107.1| 184|Caenorhabditis elegans Hypothetical ... 27 2.4
Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical pr... 26 4.1
U80837-8|AAB37908.1| 412|Caenorhabditis elegans Hypothetical pr... 25 5.5
AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical ... 25 5.5
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 25 9.5
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 25 9.5
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 25 9.5
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 25 9.5
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 25 9.5
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 25 9.5
U14635-10|AAM81107.1| 552|Caenorhabditis elegans Abnormal dye f... 25 9.5
U14635-9|AAK84493.1| 574|Caenorhabditis elegans Abnormal dye fi... 25 9.5
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.016
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 1 FGTRDRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSELGDECSDL 159
+ T +++ R K QN+ A TR R+KK+ E E + L + +L D+ S+L
Sbjct: 135 YKTPEKKERKKAQNRLAATRYREKKRREKEEAMTCIEGLSVTNGKLKDQVSEL 187
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSEL 138
+RR+ I E+NK A R R++KK E + ++ A+ + ++L
Sbjct: 392 ERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQL 433
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSEL 138
+RR+ I E+NK A R R++KK E + ++ A+ + ++L
Sbjct: 343 ERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQL 384
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEHALCSHHSEL 138
+RR+ I E+NK A R R++KK E + ++ A+ + ++L
Sbjct: 343 ERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQL 384
>AF047665-2|AAP13767.1| 222|Caenorhabditis elegans Hypothetical
protein T23E1.3 protein.
Length = 222
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 20 VLV*RSRIKMQSPADGKRKRLRSKSFLTRNTP 115
VL+ R RI P D +RKR S+S R P
Sbjct: 61 VLLHRIRILEMKPTDPRRKRFASESLPCRKLP 92
>AF047656-9|AAC05107.1| 184|Caenorhabditis elegans Hypothetical
protein F17E9.5 protein.
Length = 184
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 129 VM*TQGVFLVKKDFDLSLFLLPSAGDCIFILLLY 28
V+ +G +V F+L + L S GDC F+ L+
Sbjct: 35 VLYARGAVIVCASFELLMVLFGSLGDCNFLAKLF 68
>Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical
protein F55C5.8 protein.
Length = 622
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 59 ADGKRKRLRSKSFLTRNT 112
A+GK K+L+S SF+T T
Sbjct: 450 AEGKLKKLKSSSFITNET 467
>U80837-8|AAB37908.1| 412|Caenorhabditis elegans Hypothetical
protein F07E5.9 protein.
Length = 412
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 7 TRDRRSRIKEQNKNAVTR*RQKKKAEVEVLLNEEH 111
T++RRS+ NK R++K A+ V ++E+H
Sbjct: 211 TQNRRSKKSPNNKIPAMHKRRQKSAKPAVSVDEKH 245
>AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical
protein F59H6.2 protein.
Length = 701
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 156 VGAFVSKFRVM*TQGVFLVKKDFDLSLFL 70
V AFV KF V+ G+ + ++ DL LFL
Sbjct: 617 VQAFVGKFFVLQKSGLVVFQQMLDLMLFL 645
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 32 RSRIKMQSPA--DGKRKRLRSKSFLTRNTPCVHITRNL-ETNAPTC 160
R I M++P D +L K F T C+H+TR+L P C
Sbjct: 343 RRTILMKNPEMEDPYLCKLCQKRFGTEKALCMHVTRHLVSLTCPLC 388
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 RDRRSRIKEQNKNAVTR*RQKKKAEVEVL-LNEEHALCSHHSELGDE 147
RDRR R + +++ R RQKK E + EE +L S S DE
Sbjct: 56 RDRRERSRSRDRKERDRERQKKDREPKKREKQEEISLESLQSGADDE 102
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 76 KAEVEVLLNEEHALCSHHSELGDECSDLST*DS 174
+ +VLLNE HAL + ++ SD+ T DS
Sbjct: 1429 RKSADVLLNETHALADRYKDIIH--SDVDTRDS 1459
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNE 105
+R RIK + R R++KKAE + LL E
Sbjct: 428 ERIERIKRERIERERREREEKKAEEDRLLRE 458
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNE 105
+R RIK + R R++KKAE + LL E
Sbjct: 428 ERIERIKRERIERERREREEKKAEEDRLLRE 458
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNE 105
+R RIK + R R++KKAE + LL E
Sbjct: 428 ERIERIKRERIERERREREEKKAEEDRLLRE 458
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 13 DRRSRIKEQNKNAVTR*RQKKKAEVEVLLNE 105
+R RIK + R R++KKAE + LL E
Sbjct: 428 ERIERIKRERIERERREREEKKAEEDRLLRE 458
>U14635-10|AAM81107.1| 552|Caenorhabditis elegans Abnormal dye
filling protein 13,isoform b protein.
Length = 552
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 85 VEVLLNEEHALCSHHSELGDECSD 156
V + LN+E + + HS LGD D
Sbjct: 108 VSLRLNDEKRILTFHSSLGDTLED 131
>U14635-9|AAK84493.1| 574|Caenorhabditis elegans Abnormal dye
filling protein 13,isoform a protein.
Length = 574
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 85 VEVLLNEEHALCSHHSELGDECSD 156
V + LN+E + + HS LGD D
Sbjct: 130 VSLRLNDEKRILTFHSSLGDTLED 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,666,835
Number of Sequences: 27780
Number of extensions: 75297
Number of successful extensions: 226
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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