Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H05
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0242 - 15273774-15274043,15274131-15274235                       31   0.38 
10_06_0192 - 11634342-11634548,11635178-11635291                       28   4.7  
06_03_1029 - 27012557-27012693,27013146-27013224                       27   6.2  
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980...    27   8.2  

>11_04_0242 - 15273774-15274043,15274131-15274235
          Length = 124

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 21  CFPRCCSSSHRPRGSNSAFGNCSYLRSTLNCVNC 122
           C P  C  +      N  FG CS+   T NC+NC
Sbjct: 89  CIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLNC 122


>10_06_0192 - 11634342-11634548,11635178-11635291
          Length = 106

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 31  AVAPLHIGHVAPIAPLATAP 90
           A+AP+H GH+  +APL   P
Sbjct: 61  ALAPIHAGHLQAVAPLGGFP 80


>06_03_1029 - 27012557-27012693,27013146-27013224
          Length = 71

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 225 GHYRCGHKCFSVRCCDNW 172
           G + C  KC  +R CDNW
Sbjct: 29  GKFVCRGKCEDIRDCDNW 46


>04_03_0301 +
           14094370-14094584,14096694-14096727,14098084-14098095,
           14098400-14098574,14099064-14099299,14099396-14100457
          Length = 577

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   ARGKSTNVSPAVAPLHIGHVAPIAPLATAPIYGALSTASIAKV 129
           AR  +T   PA +P    HVAPIA +A+AP   A +  + A V
Sbjct: 366 ARAPATR--PAASPA-APHVAPIAAVASAPAAPAAAARAAAPV 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,463
Number of Sequences: 37544
Number of extensions: 163449
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)