Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H03
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779...    30   1.0  
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           28   3.1  
06_03_0475 - 21217253-21217639,21217717-21218757                       27   7.3  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    27   7.3  
09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     27   9.6  
01_01_1123 - 8902598-8903019,8903390-8903555,8903805-8903996,890...    27   9.6  

>04_04_0712 +
           27476319-27476569,27477150-27477402,27477535-27477914,
           27479738-27479864,27479945-27480110,27480221-27480359,
           27481854-27481987,27482087-27482229,27482367-27482565,
           27482688-27483010
          Length = 704

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 262 VVFQIGLGKRQWSQSISSTCNGASSVVRFAQRCTRQASGNV 384
           ++ QIGLG  Q  Q++   C G+  ++    +CT   +  V
Sbjct: 461 IMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKV 501


>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 325 GASSVVRFAQRCTRQASGNVTRT-ARK*PARNERHRSGSE 441
           G  SV  F+Q  TRQA+G V R    + P R   HR+  +
Sbjct: 124 GDVSVTEFSQLLTRQAAGRVNRVYGGELPPRANPHRTDDD 163


>06_03_0475 - 21217253-21217639,21217717-21218757
          Length = 475

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 32  SGSFSAGSTTGLRERDREGTGGSHRLASLERLALRQRIIEQSSN 163
           S  FSA  TT   E    G+GG+   A  +RL    +++++  N
Sbjct: 310 SSGFSARITTAPTEDASPGSGGARWAAEAQRLRKLLQLVDEKCN 353


>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 65   LRERDREGTGGSHRLASLERLALRQRIIEQSSNNQIPN 178
            ++ R+ EG G   R A LER   + + +E S  + IPN
Sbjct: 1278 MQRREEEGKGRERRKALLEREERKWKELEISLLSSIPN 1315


>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 445 KFRYRCGAVRFVQVIFVRFG*RCRSLGECIFERSGRH 335
           KF  RCG V  V+ + V    R R LGE +  R   H
Sbjct: 92  KFIRRCGRVGHVEDVVVDAAARGRGLGERVVRRLVEH 128


>01_01_1123 -
           8902598-8903019,8903390-8903555,8903805-8903996,
           8904125-8904388
          Length = 347

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 62  GLRERDREGTGGSHRLASLERLALRQRIIEQSSNNQIPNTL 184
           GL + D     GSH +     ++ +QR+  Q  +NQ   TL
Sbjct: 197 GLDKVDLVALSGSHTIGMARCVSFKQRLYNQHRDNQPDKTL 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,589
Number of Sequences: 37544
Number of extensions: 196430
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)