Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H02
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   2.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   3.8  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   5.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   5.0  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   6.6  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   6.6  

>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 309 LYGHFFKIIICVQW 268
           ++GH   +I+C+QW
Sbjct: 352 MFGHIIGVILCIQW 365


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 285 IICVQWSINFLITFELYENIR 223
           I C+ + +NFL+ F L+ NI+
Sbjct: 18  IPCLAYVVNFLVCFVLFTNIK 38


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 125 TF*QLFFLSFYYTNTHYALHIRKE 196
           T  Q+FFL  Y+   HY L+ RK+
Sbjct: 142 TICQMFFLDHYFEQLHY-LYTRKQ 164


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 305 YKKIQVLQFDYNFYCAIESQVSWYIINITQSYN 403
           YKK   L+FDY   CA + +   Y+  +  S N
Sbjct: 507 YKKWSFLKFDYFTQCAEDGEFQEYVELVEWSDN 539


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 334 IKLKDLYFFVWAFFQNNYLCPVVHKFSHY 248
           +KLK   F +   F+ N   P    FSH+
Sbjct: 82  VKLKIFLFTILLAFETNTFTPYTSTFSHF 110


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 362 DFLWHNKNYNQIEGLV 315
           + +WH +NY  +E LV
Sbjct: 581 EIIWHTRNYRIVEALV 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,964
Number of Sequences: 5004
Number of extensions: 25990
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)