Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H02
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495...    27   8.5  

>11_05_0023 -
           18447015-18447410,18448156-18448308,18448679-18449524,
           18449688-18449702
          Length = 469

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 260 FMDHWTQIII---LKKCPYKKIQVLQFDYNFYCAIESQVS 370
           ++D W QI     +K+   +  +V + DY+F C++ S+V+
Sbjct: 96  YVDRWLQIAFAPGIKEFELEMTRVSKMDYDFPCSLLSRVA 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,619,263
Number of Sequences: 37544
Number of extensions: 128729
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)