Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H02
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    30   0.61 
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    29   1.1  
AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z82068-5|CAB04896.2|  218|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 325 KDLYFFVWAFF-QNNYLCPVVHKFSHYF 245
           K+ YF ++ FF  N YL  +++ FSH+F
Sbjct: 234 KNFYFQIFNFFIANQYLITLIYTFSHFF 261


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 324  RTCIFL--YGHFFKIIICVQWSINFLITFELYENIRYINE 211
            R C FL  Y     II C   +IN ++ FEL+ + RY+NE
Sbjct: 982  RICAFLETYRQHVFIIFCFV-AINIVLFFELFWHSRYLNE 1020


>AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical
           protein Y71G12B.18 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 415 LDAPIVGLGYINDIP*NLTFYGTIKIIIKLKDLYFFVWAFF 293
           +DA ++    +NDI  NLTFYG   I     DLY  +  +F
Sbjct: 153 IDAELLYKQKMNDIGRNLTFYGADPITDVNADLYSRIGKYF 193


>Z82068-5|CAB04896.2|  218|Caenorhabditis elegans Hypothetical
           protein W04A4.2 protein.
          Length = 218

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 380 INITQSYNGCIKTH 421
           I  TQSYNGC++ H
Sbjct: 74  ITRTQSYNGCVRRH 87


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 250 NEKIYGPLDTNNYFEKMPIQKNTSPSI 330
           NE +  P D+N+YF K  + KNT  ++
Sbjct: 667 NEALSYPEDSNDYFLKSMMAKNTERTV 693


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,115,943
Number of Sequences: 27780
Number of extensions: 137568
Number of successful extensions: 374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)