Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H02
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   1.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 300 HFFKIIICVQWSINFLITFELYENIRYIN 214
           H  K+++ V W    ++ FEL    R IN
Sbjct: 62  HRKKVLLSVWWDYKGIVYFELLSPNRTIN 90


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 300 HFFKIIICVQWSINFLITFELYENIRYIN 214
           H  K+++ V W    ++ FEL    R IN
Sbjct: 184 HRKKVLLSVWWDYKGIVYFELLPPNRTIN 212


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 300 HFFKIIICVQWSINFLITFELYENIRYIN 214
           H  K+++ V W    ++ FEL    R IN
Sbjct: 63  HRKKVLLLVWWDHKGIVYFELLPPNRTIN 91


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 346 IKIIIKLKDLYFFVWAFFQNNYLCPVVHKFSHYF 245
           IK++  +  L+F  WA F    L  V  + S Y+
Sbjct: 269 IKMLSAVVILFFICWAPFHTQRLLYVYAQESDYY 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,280
Number of Sequences: 438
Number of extensions: 1928
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)