Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H01
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   1.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   1.8  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   2.4  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    23   4.2  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    23   5.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    23   7.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    23   7.3  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 200 PPPSHP*IDPILSIMNRFKFCPSIATVSVMDLSYNRYR*LFKKNECYLIDKFDTS 36
           P P +  + P LS++NR+ F  SI   +++     R R    K    L+ +FD +
Sbjct: 156 PKPRYFRLKPDLSVINRYGF-NSIGHDAILAKIQKRVRKYIAKTSPQLLKQFDAN 209


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 110 DLSYNRYR*LFKKNECYLIDKFDTSEKL 27
           + S NRYR  + +N C L+    T E L
Sbjct: 64  NFSRNRYRFSYVENSCTLLQLLSTLENL 91


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 137 PSIATVSVMDLSYNRYR*LFKKNECY 60
           P+  TV + ++ YN++    +KNE Y
Sbjct: 682 PNAETVKLEEIPYNKFFKTVEKNEAY 707


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 167 LSIM-NRFKFCPSIATVSVMDLSYNRYR*LFKKN 69
           L IM N  + C S + + V D  Y+++  LFKK+
Sbjct: 287 LGIMYNSGQICTSNSRIYVQDSVYDKFIELFKKH 320


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 77 KKNECYLIDKFDTSEK 30
          ++ +CY +D F T EK
Sbjct: 30 QEKQCYYLDSFHTGEK 45


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 197 PPSHP*IDPILSIMNRFKFCPSIATVSVMDLSYNRYR 87
           P  H  I+P  S  + F+  PS+  +S+   ++ + R
Sbjct: 305 PSKHSSIEPNTSQEDSFQELPSLNKLSIQSRAFKKMR 341


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 2   GTRYE*GSLIFHSCQIY 52
           G+ YE  +LIF+ C I+
Sbjct: 93  GSNYERNALIFNMCMIF 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,517
Number of Sequences: 5004
Number of extensions: 11974
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)