Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H01
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0606 + 4831102-4833033                                           27   1.6  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    26   3.6  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    25   8.4  
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    25   8.4  
02_01_0406 - 2958933-2962076                                           25   8.4  

>11_01_0606 + 4831102-4833033
          Length = 643

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 155 NRFKFCPSIATVSVMDLSYNR 93
           ++F  CP  A + V+DLSYNR
Sbjct: 130 SQFSPCPMKAELQVLDLSYNR 150


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 143 FCPSIATVSVMDLSYNRY 90
           FC S  + +V+DLSYNR+
Sbjct: 933 FCISSPSFTVLDLSYNRF 950



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 143 FCPSIATVSVMDLSYNRY 90
           FC S ++ +V+DLSYN++
Sbjct: 198 FCISSSSFAVLDLSYNQF 215


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 154  TDLSFAPV*QLSVSWIFHITDTDNYLK 74
            + +SF  + +LS++W   +T  DN+L+
Sbjct: 1093 SSVSFQSLTKLSITWCRSLTSLDNFLQ 1119


>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/18 (38%), Positives = 16/18 (88%)
 Frame = -1

Query: 143 FCPSIATVSVMDLSYNRY 90
           FC ++ +++V++LSYN++
Sbjct: 187 FCTNLPSLAVLELSYNQF 204


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 146 KFCPSIATVSVMDLSYNRY 90
           +FC S + +SV++L YN++
Sbjct: 196 RFCDSSSNLSVLELCYNQF 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,508,740
Number of Sequences: 37544
Number of extensions: 76582
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)