Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G23
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   1.2  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   2.1  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   3.6  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
 Frame = +1

Query: 265  GDPS--YKLCLYYRDVGG----YVTEKIRQAVQTSRRTIMVLSENFLR-SEWIRC-ELKS 420
            G+P    K CL   DV       +  +I Q   +   T + + E  L+   W  C EL S
Sbjct: 949  GEPKDLMKKCLETEDVKSAAECLIIWQIHQGSASCASTFLSIYEMALKIKNWDVCTELSS 1008

Query: 421  ALHQVLTDRRKRLIVVLLRQVPQRDLDQDIRLYLKTNKCLYADDR 555
             L  V  D  KRL+   L  + +    +DIRLY + N  +   D+
Sbjct: 1009 YL--VSLDPEKRLLKTALELLDEGPDSKDIRLYDQFNNLMKEVDK 1051


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 490 RDLDQDIRLYLKTNKCLYADDRLSWEKLQF 579
           R++ ++IR YL T K L  ++ + W +LQF
Sbjct: 645 REVLENIRDYLVTEKPLSFEECIMWARLQF 674


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 376 ENFLRSEWIRCELKSALHQVLTDRRKRLIVVLLRQVPQRDLDQDI-----RLYLKTNKCL 540
           E+ L+ E I+ +  +A   +   +  +   ++L    QR  D D       +Y K+ K +
Sbjct: 601 EDDLKHEAIQRQHSTASEALSVAQSMKAKALILTHFSQRSYDADFLPPDWTIYPKS-KTI 659

Query: 541 YADDRLSWEKLQ 576
           YA+D L W++ Q
Sbjct: 660 YANDGLQWQQFQ 671


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 149 IEQATLIERIQRKCTTHSYVTVQKMKHGLLMSLHQHWNTVTPPTSFVY 292
           IEQ   +E IQ+K + H Y T+++      + +  +  +   P+S VY
Sbjct: 253 IEQPMALEVIQKKLSKHRYETIEQFVDDFNL-MFDNAKSFNDPSSQVY 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,870
Number of Sequences: 5004
Number of extensions: 44217
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)