Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G23
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    32   0.40 
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    29   2.8  
04_04_1654 - 35075409-35075926,35076396-35078694                       29   3.7  
04_04_0537 + 26079926-26079994,26080317-26080500,26081866-260839...    27   8.6  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +1

Query: 100 QEMRVWCYSKFGVRL-FYRASDVDREDSEKMYDAFICYSSK-DETWVTDELAPTLEHGDP 273
           Q   + C +K GV + F +   V+R   E +++  + Y    D+TW+ D++   +     
Sbjct: 197 QVRNIPCGTKGGVMISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCS 256

Query: 274 SYKLCLYYRDVGGYVTEKIRQAVQ 345
           ++ L   Y D+   + E +++A+Q
Sbjct: 257 AHSLQQVYIDLFDQIDETMKEAIQ 280


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 425 CIKS*RIDEKGL*WCCYVKCPKG 493
           C ++ R+D  G  WCC V CP G
Sbjct: 296 CGRAVRVDGGGGRWCCEVSCPCG 318


>04_04_1654 - 35075409-35075926,35076396-35078694
          Length = 938

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 154 ASDVDREDSEKMYDA-FICYSSKDETWVTDELAPTLEHGDPSYKLCLYYRDVGGYVTEK 327
           A D  R + E  Y A + C   KDE  +   + PTL+  D +++      ++ G+ T +
Sbjct: 793 AIDESRLEEETRYLASWFCQIRKDEDRLRAAIDPTLDQSDETFESISVIAELAGHCTSR 851


>04_04_0537 +
           26079926-26079994,26080317-26080500,26081866-26083910,
           26084323-26084424,26084566-26084622
          Length = 818

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 370 LSENFLRSEWIRCELKSALH-QVLTDRRKRLIVVLLRQVPQRDLDQDIRLYL 522
           L E  + SE IRCEL+  LH ++  D  ++L V+ ++++ + + + +IR+ L
Sbjct: 451 LIEEKIDSE-IRCELQHVLHSEIFRDLVRKLAVLDVQKLTEENGELNIRVEL 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,455
Number of Sequences: 37544
Number of extensions: 268116
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)