Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G23
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...   118   3e-29
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score =  118 bits (285), Expect = 3e-29
 Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 24/216 (11%)
 Frame = +1

Query: 13   VQDYIPXXXXXXXXXXXXXXXXXXXXXYRQEMRVWCYSKFGVRLFYRASDVDRE------ 174
            V DY+P                     +R+ +  W YSK+G+R F RA            
Sbjct: 991  VSDYLPLVAATLSGVLVLLVIIVLAFVFRESVGAWAYSKYGLR-FLRAKPGKSSGAAAMA 1049

Query: 175  -----------DSEKMYDAFICYSSKDETWVTDELAPTLEHGDPSYKLCLYYRDV----- 306
                       D E++YD ++CYS  DE +V   LA  LEHG    +LCL++RD+     
Sbjct: 1050 SAAPMPACFDSDRERLYDCYVCYSPNDEDFVLHSLAVELEHGAAGLRLCLHHRDLPCVLR 1109

Query: 307  GGYVTEKIRQAVQTSRRTIMVLSENFLRSEWIRCELKSALHQVLTDRRKRLIVVLLRQV- 483
                   + +AV  SRR ++VL+ NFL +EW R E ++ALH+ L  R  +LI+V      
Sbjct: 1110 ASTPAPVVLEAVHASRRVLIVLTRNFLLTEWSRFEFRAALHEALRGRTAQLIIVQAENAY 1169

Query: 484  PQRDLDQDIRLYLKTNKCLYA-DDRLSWEKLQFALP 588
            P+ +LD+++R YL+T   +   +++  WE+L++A+P
Sbjct: 1170 PEVELDRELRPYLRTAAAILTWNEKRFWERLRYAIP 1205


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 259 EHGDPSYKLCLYYRDV 306
           E+ DP YKL  +  DV
Sbjct: 213 EYNDPEYKLDYFMEDV 228


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 259 EHGDPSYKLCLYYRDV 306
           E+ DP YKL  +  DV
Sbjct: 213 EYNDPEYKLDYFMEDV 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 413 NSQRIHSDLKKFSLRTIIVRREVCTACLIFSVT*PPTS 300
           N +   S L K  L T+      CTA  +   T PP S
Sbjct: 678 NPKLARSVLYKIYLNTMESHEVRCTAVFLLMKTNPPLS 715


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 593 TSGNANCNFSQDN 555
           T+GNAN N S +N
Sbjct: 229 TAGNANTNASNNN 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,593
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)