Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G21
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    28   0.84 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   0.84 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    27   1.1  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   1.1  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.9  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.9  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   7.9  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   7.9  

>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 267 YPIIITLSDLFLTINSFVYDPADMWTVQWFN*SFFNVNIFYFAIQNPLS--ICLRI 106
           +P++I    L +      ++  D  ++ W N SF N N FY  I  P++  ICL I
Sbjct: 98  WPLLIIWCILIVFAIDKNFEVKDFLSI-WINESFINENRFYSEIWGPIAIYICLFI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 267 YPIIITLSDLFLTINSFVYDPADMWTVQWFN*SFFNVNIFYFAIQNPLS--ICLRI 106
           +P++I    L +      ++  D  ++ W N SF N N FY  I  P++  ICL I
Sbjct: 78  WPLLIIWCILIVFAIDKNFEVKDFLSI-WINESFINENRFYSEIWGPIAIYICLFI 132


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 267 YPIIITLSDLFLTINSFVYDPADMWTVQWFN*SFFNVNIFYFAIQNPLSI 118
           +P++I    L +      ++  D  ++ W N SF N N FY  I  P++I
Sbjct: 78  WPLLIIWCILIVFAIDKNFEVKDFLSI-WINESFINENRFYSEIWGPIAI 126


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 267 YPIIITLSDLFLTINSFVYDPADMWTVQWFN*SFFNVNIFYFAIQNPLSI 118
           +P++I    L +      ++  D  ++ W N SF N N FY  I  P++I
Sbjct: 78  WPLLIIWCILIVFAIDKNFEVKDFLSI-WINESFINENRFYSEIWGPIAI 126


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 399 CTKYIKYILCNAKTVTLPSPSIVQ 470
           C +YI   LC+ K  T  +PS+++
Sbjct: 92  CLEYIVERLCSTKVSTYTTPSLIE 115


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 352 FSMKRVGERERSAPNPRELLRPTASLTHLSYHY 254
           FS+KR+  + + AP+ R+L+    S+   + H+
Sbjct: 418 FSLKRINIQVKEAPDARDLVLKGGSIQFDNVHF 450


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 109 TEANRQGVLDSKIK-NVHIEETLIKPLNGPHV 201
           ++AN   + +S +K  +   E  +KP NGPH+
Sbjct: 58  SKANNHFLCNSPLKFEIFNNEKSVKPSNGPHL 89


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 218 LFMILLTCGPFSGLIRVSSM*TFFILLSKTPCR 120
           LF IL       G I VSS+  +F  L KTP +
Sbjct: 512 LFEILSATALIEGRISVSSVLQYFHALRKTPSK 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,765
Number of Sequences: 5004
Number of extensions: 34628
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)