Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G21
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane p...    27   5.3  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   5.3  
Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical
           protein C36H8.2 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 261 IIITLSDLFLTINSFVYDPADMWTVQWFN*SFFN-VNIFYF 142
           +I+ +S   L  + F+ DP   WT   FN  + N VN + F
Sbjct: 37  VILAVSSALLLSSHFIGDPITCWTPAQFNAQWVNFVNQYCF 77


>U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 261 IIITLSDLFLTINSFVYDPADMWTVQWFN*SFFN-VNIFYF 142
           +I+ +S   L  + F+ DP   WT   FN  + N VN + F
Sbjct: 11  VILAVSSALLLSSHFIGDPITCWTPAQFNAQWVNFVNQYCF 51


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 309 TPANCCGRQPRSHTYPII-ITLSDLFLTINSFVYDPADMWTVQWFN 175
           TPANCC   P    +P+    +SDLF      +YD A +   Q+ N
Sbjct: 188 TPANCCTNIPLDSQFPLYEQRVSDLF-----SLYDGAPVQIFQFIN 228


>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 207 PADMWTVQWFN*SFFNVNIFYFAIQNPLSICLRIHNNVNESL---DSNG 70
           P D+ T+ +   S FN       + +P++IC  IH   ++ L   D NG
Sbjct: 81  PEDVETLLFHAFSIFNKQPMLIEVNSPINICGDIHGQFSDLLRLFDKNG 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,834
Number of Sequences: 27780
Number of extensions: 195497
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)