Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G21
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 260 SLLLLVIYF*RSIPLFMILLTCGPFSGLIRVSSM*TFFILLSKTPCRFASVYTIM*TSHS 81
           S L   I F RS+  ++I +     SGLI + S  +F++  + TP R A   T + T  +
Sbjct: 208 SRLACEIQFVRSMGYYLIQIYIP--SGLIVIISWVSFWLNRNATPARVALGVTTVLTMTT 265

Query: 80  IL 75
           ++
Sbjct: 266 LM 267


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 260 SLLLLVIYF*RSIPLFMILLTCGPFSGLIRVSSM*TFFILLSKTPCRFASVYTIM*TSHS 81
           S L   I F RS+  ++I +     SGLI + S  +F++  + TP R A   T + T  +
Sbjct: 208 SRLACEIQFVRSMGYYLIQIYIP--SGLIVIISWVSFWLNRNATPARVALGVTTVLTMTT 265

Query: 80  IL 75
           ++
Sbjct: 266 LM 267


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 260 SLLLLVIYF*RSIPLFMILLTCGPFSGLIRVSSM*TFFILLSKTPCRFASVYTIM*TSHS 81
           S L   I F RS+  ++I +     SGLI + S  +F++  + TP R A   T + T  +
Sbjct: 147 SRLACEIQFVRSMGYYLIQIYIP--SGLIVIISWVSFWLNRNATPARVALGVTTVLTMTT 204

Query: 80  IL 75
           ++
Sbjct: 205 LM 206


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 330 SPTLFIENSHGTPASNLSFDKK 395
           SPT+  E +HGT A++  + K+
Sbjct: 643 SPTVLEELTHGTLAASTLYSKR 664


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 330 SPTLFIENSHGTPASNLSFDKK 395
           SPT+  E +HGT A++  + K+
Sbjct: 643 SPTVLEELTHGTLAASTLYSKR 664


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 330 SPTLFIENSHGTPASNLSFDKK 395
           SPT+  E +HGT A++  + K+
Sbjct: 643 SPTVLEELTHGTLAASTLYSKR 664


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 366  PASNLSFDKKICTKYIKYILCNAKTVTLPSPSI 464
            PA   SFD K    Y + +      V +P+P +
Sbjct: 1276 PAKIASFDDKFTATYKEDVKLPCLAVGVPAPEV 1308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,201
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)