Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G20
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.31 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 185 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMVVIRGNSIIMLESLDRI 340
           R V   + GFDP++    DE +E+  D +   +   +  G +I  L  L +I
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 406 NGEIYGIFCCYLCKNYY 356
           +G+ YG++ C  CK ++
Sbjct: 118 SGKHYGVYSCEGCKGFF 134


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 406 NGEIYGIFCCYLCKNYY 356
           +G+ YG++ C  CK ++
Sbjct: 118 SGKHYGVYSCEGCKGFF 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 257 ILLRTRLAPDS*KDQNLSIHRSQL 186
           +LL+ RL P+S    +L+ H S L
Sbjct: 267 LLLKARLNPNSSLQPSLASHHSHL 290


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 397 IYGIFCCYLCKNYYYLFILYSIK 329
           ++G   C++CK+      LY +K
Sbjct: 19  LHGQVICFVCKDITSTSALYRLK 41


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 412 KYNGEIYGIFCCYLCKNYY 356
           K +G  YG+  C  CK ++
Sbjct: 73  KASGFHYGVHSCEGCKGFF 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,051
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)