Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G19
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   3.0  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    25   9.3  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 328  DMLLVYNQMLCGVCHLILLFIQKSHNTYFLNLMMT*KVKLYVLLMCNSVHSIL*E-VC 158
            D  ++   +LC +CHL+++     H++  + L++   + +  LL+    HS++ E +C
Sbjct: 1042 DNAIICEPLLCTLCHLLVI-----HDSRTVGLVVNAFLAITPLLVSEQAHSLVREFIC 1094


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 94  LQYIILLVRIPQPGDPLVLERPAQH 20
           L+ I+ L+R P P DPLV     Q+
Sbjct: 110 LEQILQLLREPNPDDPLVASIAEQY 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,371
Number of Sequences: 5004
Number of extensions: 37446
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)