Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G17
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   1.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   1.8  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    24   4.0  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    24   5.3  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    23   9.3  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.3  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 210 HRLSVAYRTHSLARVVSDYRSLMYNISLFILLMKPYPLLT-LNHLT 76
           H L   Y +H+L   + DY   ++++ LF   ++   L T  N +T
Sbjct: 332 HELGHWYMSHNLINTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFIT 377


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 180 SLARVVSDYRSLMYNISLFIL 118
           SL   +SDYRS++  ISLF L
Sbjct: 548 SLCDSLSDYRSILLLISLFFL 568


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 130 FVHSIDETISTLDVEPFDSTRNLFSK 53
           + H +D T+S   +EPFD+T +L+ +
Sbjct: 657 YSHRLDCTLSQR-IEPFDTTDSLYDR 681


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 208 VEFAVVAGEKGYEAPELLVPGV 273
           VEF + A +K  +A   LVPGV
Sbjct: 156 VEFVIGAVDKSLDAKGYLVPGV 177


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 54  LLKRFRVLSNGSTSRVDMVSSIE*TKKCCTSN 149
           L K     SN  +SR  ++ SIE  K C  SN
Sbjct: 251 LRKSTSTKSNSVSSRSHLIMSIELFKVCTKSN 282


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 245 KHQSYWSLACESVKG 289
           +H S W  AC+  KG
Sbjct: 87  QHDSIWCTACQQTKG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,055
Number of Sequences: 5004
Number of extensions: 15281
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)