Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G17
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 34 0.023
02_01_0158 - 1103461-1104186 31 0.21
11_01_0455 + 3517281-3519798,3519888-3520261 29 0.49
09_02_0456 - 9525067-9525422,9525679-9528226 28 1.1
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 28 1.1
11_06_0081 + 19886848-19888050,19888243-19888896 27 2.6
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 27 3.5
05_01_0192 + 1394342-1396645 26 4.6
03_02_0771 + 11041882-11042073,11042669-11042851,11042946-110430... 26 4.6
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 26 6.1
11_06_0172 - 20877029-20878049,20880129-20880400 26 6.1
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 26 6.1
04_01_0619 - 8125611-8127967,8128449-8130123 26 6.1
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 25 8.0
>08_01_0202 - 1638978-1639571
Length = 197
Score = 33.9 bits (74), Expect = 0.023
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 56 AEKVSGTVKWFNVKSGYGFI 115
+E+V GTVKWF+ G+GFI
Sbjct: 3 SERVKGTVKWFDATKGFGFI 22
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 184 RSVGDGEAVEFAVVAGEKG-YEAPELLVPG 270
RS+ DG+ VEF+V +G G +A ++ PG
Sbjct: 44 RSLNDGDVVEFSVGSGNDGRTKAVDVTAPG 73
>02_01_0158 - 1103461-1104186
Length = 241
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 56 AEKVSGTVKWFNVKSGYGFIN 118
A + GTVKWFN G+GFI+
Sbjct: 4 AARHRGTVKWFNDTKGFGFIS 24
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 139 VHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKG 240
VHQ++I + RS+ +GE VEFA+ E G
Sbjct: 34 VHQSSIKADG----FRSLAEGEQVEFAISESEDG 63
>11_01_0455 + 3517281-3519798,3519888-3520261
Length = 963
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 121 NEQRNVVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAPE 255
N+ + V + R AV SVGD + + G GY APE
Sbjct: 796 NDMKAYVGDFGLARLKADAAVPSVGDSNSTSMIAIKGTIGYVAPE 840
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 184 RSVGDGEAVEFAVVAGEKGYEAPE 255
+S+GDG A +V+AG GY APE
Sbjct: 828 KSIGDGPAT-MSVIAGSCGYIAPE 850
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 148 TAIIRNNPRKAVRSVGDGEAVEFAVVAG 231
TAI+ N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 157 IRNNPRKAVRSVGDGEAVEFAV-VAGEKGYEAPELLVPGV 273
+RN V G GEA +AG +GY APE L GV
Sbjct: 443 LRNFGGARVIRGGGGEAFTMTSNIAGTRGYTAPEYLEHGV 482
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 193 GDGEAVEFAVVAGEKGYEAPELLVPG 270
GDG + VAG GY APE L+ G
Sbjct: 234 GDGRSHVQTRVAGTNGYMAPEYLMHG 259
>05_01_0192 + 1394342-1396645
Length = 767
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 184 RSVGDGEAVEFAVVAGEKGYEAPELLVPG 270
R GE+ + AG GY APE L+ G
Sbjct: 565 RQAEHGESPDATAAAGTMGYLAPEYLLTG 593
>03_02_0771 +
11041882-11042073,11042669-11042851,11042946-11043020,
11043089-11043283,11043380-11043478,11044189-11044352,
11045676-11045742,11045842-11045894,11046287-11046413,
11047439-11047627,11048201-11048287,11048411-11048565,
11048814-11048933,11049043-11049268,11049729-11049788,
11049877-11050050,11050138-11050247,11050417-11050582
Length = 813
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 VDMVSSIE*TK-KCCTSNCDNPKQPSQ 176
V+ V S E K KCCT ++PKQ SQ
Sbjct: 761 VERVLSAERDKMKCCTIEYNHPKQSSQ 787
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 228 GNHGKLHRLSVAY---RTHS-LARVVSDYRSLMYNISLFILLMKPYPLLTLNHLTV 73
G H K+HR+SV Y H ++ + S + +I++F +P LL L HL V
Sbjct: 482 GAHKKIHRVSVQYDADEEHGIISTTILGSLSQVRSIAVFRSSFRP-SLLELKHLRV 536
>11_06_0172 - 20877029-20878049,20880129-20880400
Length = 430
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 216 KLHRLSVAYRTHSLARVVSDYRSLMYNISLFILLMKPYPLLTLNHL 79
KL+R+ + + D+ M N + L K YPLL NH+
Sbjct: 323 KLYRVDTLAKELVEISDLGDHVLFMGNNQTYCLCAKEYPLLKANHI 368
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 154 IIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAPE 255
++R N S+GD + A + G GY APE
Sbjct: 728 LVRFNFGSTTASLGDTNSTSSAAIKGTIGYIAPE 761
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 234 LPGNHGKLHRLSV-AYRTHSLARVV 163
+P + GKLHRL V +R +SL+ V+
Sbjct: 122 IPADLGKLHRLEVLVFRRNSLSGVI 146
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 181 VRSVGDGEAVEFAVVAGEKGYEAPEL 258
+ V D EA +AG KGY APEL
Sbjct: 911 IAKVLDVEASNCTKLAGTKGYLAPEL 936
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,377,129
Number of Sequences: 37544
Number of extensions: 99646
Number of successful extensions: 440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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