Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G17
(295 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 65 1e-11
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 65 1e-11
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 59 1e-09
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 27 4.0
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 27 4.0
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 27 4.0
AY069694-1|AAL39839.1| 843|Drosophila melanogaster LD46629p pro... 26 7.1
AE014298-970|AAO41636.1| 843|Drosophila melanogaster CG33691-PB... 26 7.1
AE014296-3779|EAL24540.1| 366|Drosophila melanogaster CG17698-P... 26 7.1
AE014296-3778|EAL24539.1| 676|Drosophila melanogaster CG17698-P... 26 7.1
AE014296-3777|EAL24538.1| 676|Drosophila melanogaster CG17698-P... 26 7.1
AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P... 26 7.1
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P... 26 7.1
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +1
Query: 139 VHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAPELLVP 267
VHQ+AI RNNP+KAVRSVGDGE VEF VV GEKG EA + P
Sbjct: 89 VHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGP 131
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +2
Query: 53 LAEKVSGTVKWFNVKSGYGFINR 121
+A KV+GTVKWFNVKSGYGFINR
Sbjct: 58 IATKVTGTVKWFNVKSGYGFINR 80
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +1
Query: 139 VHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAPELLVP 267
VHQ+AI RNNP+KAVRSVGDGE VEF VV GEKG EA + P
Sbjct: 89 VHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGP 131
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +2
Query: 53 LAEKVSGTVKWFNVKSGYGFINR 121
+A KV+GTVKWFNVKSGYGFINR
Sbjct: 58 IATKVTGTVKWFNVKSGYGFINR 80
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 58.8 bits (136), Expect = 1e-09
Identities = 30/43 (69%), Positives = 33/43 (76%)
Frame = +1
Query: 139 VHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAPELLVP 267
VHQ+AI NNP+KAVRSVGDGE VEF VV GEKG EA + P
Sbjct: 90 VHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGP 131
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +2
Query: 53 LAEKVSGTVKWFNVKSGYGFINR 121
+A KV+GTVKWFNVKSGYGFINR
Sbjct: 59 IATKVTGTVKWFNVKSGYGFINR 81
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GTVKWFNVKSGYGFI 115
G KWFNV G+GF+
Sbjct: 41 GKCKWFNVAKGWGFL 55
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GTVKWFNVKSGYGFI 115
G KWFNV G+GF+
Sbjct: 41 GKCKWFNVAKGWGFL 55
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GTVKWFNVKSGYGFI 115
G KWFNV G+GF+
Sbjct: 41 GKCKWFNVAKGWGFL 55
>AY069694-1|AAL39839.1| 843|Drosophila melanogaster LD46629p
protein.
Length = 843
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 216 KLHRLSVAYRTHSLARVVSDYRSLMYNISLFILLMKPY 103
+LH +A +TH+ A V YR M N+ + +PY
Sbjct: 528 QLHAQMMAQQTHANANRVGSYREHMNNLMMSGSSRQPY 565
>AE014298-970|AAO41636.1| 843|Drosophila melanogaster CG33691-PB,
isoform B protein.
Length = 843
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 216 KLHRLSVAYRTHSLARVVSDYRSLMYNISLFILLMKPY 103
+LH +A +TH+ A V YR M N+ + +PY
Sbjct: 528 QLHAQMMAQQTHANANRVGSYREHMNNLMMSGSSRQPY 565
>AE014296-3779|EAL24540.1| 366|Drosophila melanogaster CG17698-PA,
isoform A protein.
Length = 366
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 190 VGDGEAVEFAVVAGEKGYEAPELLVPG 270
+GD + AG + APE L+PG
Sbjct: 135 LGDDATISNGSTAGTPAFRAPETLIPG 161
>AE014296-3778|EAL24539.1| 676|Drosophila melanogaster CG17698-PC,
isoform C protein.
Length = 676
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 190 VGDGEAVEFAVVAGEKGYEAPELLVPG 270
+GD + AG + APE L+PG
Sbjct: 445 LGDDATISNGSTAGTPAFRAPETLIPG 471
>AE014296-3777|EAL24538.1| 676|Drosophila melanogaster CG17698-PB,
isoform B protein.
Length = 676
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 190 VGDGEAVEFAVVAGEKGYEAPELLVPG 270
+GD + AG + APE L+PG
Sbjct: 445 LGDDATISNGSTAGTPAFRAPETLIPG 471
>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
isoform B protein.
Length = 2968
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 72 VLSNGSTSRVDMVSSIE*T-KKCCTSNCDNPK 164
+ +G+ VD +S I + KC S+CD+PK
Sbjct: 592 IACSGANCNVDNISEISQSCYKCSGSDCDDPK 623
>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
isoform A protein.
Length = 2931
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 72 VLSNGSTSRVDMVSSIE*T-KKCCTSNCDNPK 164
+ +G+ VD +S I + KC S+CD+PK
Sbjct: 555 IACSGANCNVDNISEISQSCYKCSGSDCDDPK 586
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,675,033
Number of Sequences: 53049
Number of extensions: 165627
Number of successful extensions: 463
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 506778984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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