Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G14
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    32   0.059
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.7  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    27   2.2  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   3.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.8  

>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +3

Query: 354 ANAEHRLLYIPLLQAERAWAFAMQLRQEANTEPRKKFHLVSRLKKAFAHSQTLLQLCESG 533
           ++ + R   I L  A+RA+   + LR        ++ H + RLK+A    + L+    + 
Sbjct: 105 SSVDKRYAEILLFNADRAFQQFVFLRSS------QRRHALRRLKRADQFGKELVSFTNAF 158

Query: 534 NC-DARTQLEASAYAAWLGGILLVELQQWRAA 626
           +C D    LEA A+A ++ G L  E + W  +
Sbjct: 159 DCNDHIFYLEAIAFAKYIEGTLNYEKRDWEGS 190


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 111 KSLSNEETENDDIKTSKLLSLEIFRITKDGQQQH 212
           KSL+ +ET+ D I +S+L+   +FR  ++ QQQ+
Sbjct: 540 KSLTEDETDTDQIISSRLV---VFRNIRELQQQN 570


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 90  EGSTDDGKSLSNEETENDDIKTSKLLSLEI 179
           EGS DD KS++  E++N  + +  L  L++
Sbjct: 338 EGSNDDHKSVTTTESQNKFVNSQILSDLQV 367


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 586 PSHAAYALASNCVRASQFPLSHNCNKVCECA 494
           P+H AY  A   VRA    + + CN  C C+
Sbjct: 285 PTHFAYD-AQGRVRADTGAVIYECNSFCSCS 314


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 514 NKVCECAKAF-FKRETR*NFFLGSVLASCRSCIANAQA 404
           N   E  K+F FK+ +  N  L S L  C S +A+AQA
Sbjct: 209 NSELEWFKSFLFKKSSIDNSLLHSSLGRCFSALASAQA 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,896
Number of Sequences: 5004
Number of extensions: 41906
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)