Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G14
(626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 152 9e-37
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 152 9e-37
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 151 3e-36
D89629-1|BAB46925.1| 815|Homo sapiens cerebral protein-12 protein. 31 3.3
D83018-1|BAA11681.1| 816|Homo sapiens nel-related protein 2 pro... 31 3.3
BC020544-1|AAH20544.1| 816|Homo sapiens NELL2 protein protein. 31 3.3
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 152 bits (369), Expect = 9e-37
Identities = 76/154 (49%), Positives = 101/154 (65%)
Frame = +3
Query: 165 LSLEIFRITKDGQQQHGLRHGDYQXXXXXXXXXXXXXXXXXXXPQGDRRHYRRRDVTTTH 344
LSLEI +I K+ QQQHGLRHGD+Q G+R + + VT
Sbjct: 58 LSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEEL 117
Query: 345 LTAANAEHRLLYIPLLQAERAWAFAMQLRQEANTEPRKKFHLVSRLKKAFAHSQTLLQLC 524
LT ++R L + L+ AERAW++AMQL+QEANTEPRK+FHL+SRL+KA H++ L +LC
Sbjct: 118 LT----DNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLC 173
Query: 525 ESGNCDARTQLEASAYAAWLGGILLVELQQWRAA 626
ES DA+T+LEA AY A+L G+L E Q+W+AA
Sbjct: 174 ESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAA 207
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 152 bits (369), Expect = 9e-37
Identities = 76/154 (49%), Positives = 101/154 (65%)
Frame = +3
Query: 165 LSLEIFRITKDGQQQHGLRHGDYQXXXXXXXXXXXXXXXXXXXPQGDRRHYRRRDVTTTH 344
LSLEI +I K+ QQQHGLRHGD+Q G+R + + VT
Sbjct: 58 LSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEEL 117
Query: 345 LTAANAEHRLLYIPLLQAERAWAFAMQLRQEANTEPRKKFHLVSRLKKAFAHSQTLLQLC 524
LT ++R L + L+ AERAW++AMQL+QEANTEPRK+FHL+SRL+KA H++ L +LC
Sbjct: 118 LT----DNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLC 173
Query: 525 ESGNCDARTQLEASAYAAWLGGILLVELQQWRAA 626
ES DA+T+LEA AY A+L G+L E Q+W+AA
Sbjct: 174 ESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAA 207
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 151 bits (365), Expect = 3e-36
Identities = 75/154 (48%), Positives = 101/154 (65%)
Frame = +3
Query: 165 LSLEIFRITKDGQQQHGLRHGDYQXXXXXXXXXXXXXXXXXXXPQGDRRHYRRRDVTTTH 344
LSLEI +I K+ QQQHGLRHGD+Q G+R + + VT
Sbjct: 50 LSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEEL 109
Query: 345 LTAANAEHRLLYIPLLQAERAWAFAMQLRQEANTEPRKKFHLVSRLKKAFAHSQTLLQLC 524
LT ++R L + L+ AERAW++AMQL+QEANTEPRK+FHL+SRL+KA H++ L +LC
Sbjct: 110 LT----DNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLC 165
Query: 525 ESGNCDARTQLEASAYAAWLGGILLVELQQWRAA 626
+S DA+T+LEA AY A+L G+L E Q+W+AA
Sbjct: 166 KSNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAA 199
>D89629-1|BAB46925.1| 815|Homo sapiens cerebral protein-12 protein.
Length = 815
Score = 31.1 bits (67), Expect = 3.3
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = -2
Query: 613 CCSSTRSIPPSHAAYALASNCVRASQFPLSHNCNKVCECAKAFFKRETR*NFFLGSVLAS 434
C T + S AL +C + Q LSH+C KVC K + R N S+
Sbjct: 360 CKDQTMKLVESSGCPAL--DCPESHQITLSHSCCKVC---KGYDFCSERHNCMENSI--- 411
Query: 433 CRSCIANAQALSACRSGIYSRR 368
CR+ N +A+ +CR G + R
Sbjct: 412 CRN--LNDRAVCSCRDGFRALR 431
>D83018-1|BAA11681.1| 816|Homo sapiens nel-related protein 2
protein.
Length = 816
Score = 31.1 bits (67), Expect = 3.3
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = -2
Query: 613 CCSSTRSIPPSHAAYALASNCVRASQFPLSHNCNKVCECAKAFFKRETR*NFFLGSVLAS 434
C T + S AL +C + Q LSH+C KVC K + R N S+
Sbjct: 361 CKDQTMKLVESSGCPAL--DCPESHQITLSHSCCKVC---KGYDFCSERHNCMENSI--- 412
Query: 433 CRSCIANAQALSACRSGIYSRR 368
CR+ N +A+ +CR G + R
Sbjct: 413 CRN--LNDRAVCSCRDGFRALR 432
>BC020544-1|AAH20544.1| 816|Homo sapiens NELL2 protein protein.
Length = 816
Score = 31.1 bits (67), Expect = 3.3
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = -2
Query: 613 CCSSTRSIPPSHAAYALASNCVRASQFPLSHNCNKVCECAKAFFKRETR*NFFLGSVLAS 434
C T + S AL +C + Q LSH+C KVC K + R N S+
Sbjct: 361 CKDQTMKLVESSGCPAL--DCPESHQITLSHSCCKVC---KGYDFCSERHNCMENSI--- 412
Query: 433 CRSCIANAQALSACRSGIYSRR 368
CR+ N +A+ +CR G + R
Sbjct: 413 CRN--LNDRAVCSCRDGFRALR 432
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,894,050
Number of Sequences: 237096
Number of extensions: 1466609
Number of successful extensions: 3516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3512
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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