Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G13
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   2.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   3.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   6.5  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 YTNNNDEHSNSDKSHSFNFVNKPTYKTVKH-CGALEIIQFEYAQKL 495
           Y+N +D+  +SDK  S       + KT ++   A   IQ EY +KL
Sbjct: 691 YSNTSDKEGSSDKDSSIE--EASSVKTQENGLNATLYIQMEYCEKL 734


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 237 ADNHTSSVTKFNMNKNFHPHC 299
           AD   SS+  FN    FHP+C
Sbjct: 152 ADADYSSLNPFNKESYFHPYC 172


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 344 VNDIIVSLLECNRRIAMWVKILVHI 270
           + +I  S LEC RRI   +K+L+ I
Sbjct: 516 LTNIYFSSLECLRRIRSQIKVLIDI 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,481
Number of Sequences: 5004
Number of extensions: 38937
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)