Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G13
(503 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 28 0.048
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 1.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.8
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 1.8
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 23 2.4
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 23 2.4
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 3.2
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 3.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 3.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 3.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.2
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.2
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 5.5
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 5.5
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 9.6
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 9.6
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 28.3 bits (60), Expect = 0.048
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 177 PVLHLKSSAKPVAADVQELTAD--NHTSSVTKFNMNKNFHPHCN 302
P HL+S PV D+ + + NH S F++N++F+P N
Sbjct: 337 PKEHLRSLGIPVVVDLPGVGENLHNHQSFGMDFSLNEDFYPTFN 380
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.0 bits (47), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 307 RLHSKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVN 423
R SK IIS + ++ NNN + N +K +N +N
Sbjct: 306 RERSKESKIISSLSNKTIHNNNN--YKNYNKKLYYNIIN 342
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 1.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 216 RRPASLNSSNEA-PDCLSRTK 157
RRP++ SSNEA P +S+ K
Sbjct: 49 RRPSTFGSSNEALPQPISKRK 69
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 23.0 bits (47), Expect = 1.8
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 216 RRPASLNSSNEA-PDCLSRTK 157
RRP++ SSNEA P +S+ K
Sbjct: 49 RRPSTFGSSNEALPQPISKRK 69
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 316 SKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVN--KPTYK 438
SK IIS + Y+N N+ ++N + +++ N+ N K YK
Sbjct: 76 SKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 316 SKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVN--KPTYK 438
SK IIS + Y+N N+ ++N + +++ N+ N K YK
Sbjct: 76 SKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.6 bits (46), Expect = 2.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 307 RLHSKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVNKPTYK 438
R S+ IIS + ++ NNN+ ++N+ ++++N N YK
Sbjct: 73 RERSREPKIISSLSNKTIH-NNNNYNNNNYNNYNYNNNNYNNYK 115
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -1
Query: 161 RNLPCRMPMDRRCSXXXXXXXXXXXXRTYFSSDTYH 54
R LPC +P + + R + SDT+H
Sbjct: 624 RTLPCLLPRPKSENNFASQELSREGRRIFHKSDTFH 659
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 3.2
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 301 IRRLHSKSDTIISFTNQ**VYTNNN-DEHSNSDKSHSFNFVNK 426
+ R SK IIS + ++ NNN + ++N ++ N++ +
Sbjct: 293 MERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQ 335
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -1
Query: 161 RNLPCRMPMDRRCSXXXXXXXXXXXXRTYFSSDTYH 54
R LPC +P + + R + SDT+H
Sbjct: 592 RTLPCLLPRPKSENNFASQELSREGRRIFHKSDTFH 627
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 3.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 142 ILHGKFRSGETIRCFI*RVQRSRSPRTFRS*LQTIIPPV 258
I HG + I + R R+ RS L+T++PP+
Sbjct: 1818 IYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1856
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 3.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 142 ILHGKFRSGETIRCFI*RVQRSRSPRTFRS*LQTIIPPV 258
I HG + I + R R+ RS L+T++PP+
Sbjct: 1814 IYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1852
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 307 RLHSKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVNKPTYK 438
R SK IIS + Y+N N+ ++N + +++N YK
Sbjct: 306 RERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK 349
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 21.4 bits (43), Expect = 5.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 296 LQYGDCIPKVIQ*YHLR 346
LQY C+PK I Y R
Sbjct: 38 LQYPGCVPKPIPSYACR 54
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 5.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 240 LQSAPERPRRPASLNSSNEAP 178
++S E+P +PAS +S++ AP
Sbjct: 582 IESGTEKPDKPAS-SSASSAP 601
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 20.6 bits (41), Expect = 9.6
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 307 RLHSKSDTIISFTNQ**VYTNNNDEHSNSDKSHSFNFVN 423
R S+ IIS + ++ NNN +++ ++ +++ N N
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYN 344
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 20.6 bits (41), Expect = 9.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 279 KNFHPHC 299
KNFHP C
Sbjct: 150 KNFHPRC 156
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,116
Number of Sequences: 438
Number of extensions: 2745
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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