Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G11
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    28   0.84 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   6.0  

>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155 KRWSWKTEXLISLRDLMMXYGNTDAAKAEKDTDEVKDEGFVISLKAKQI-RTFVI 316
           KR  +     +S +++++   N DA + E+  D  K+    +S KAKQ  R F+I
Sbjct: 180 KRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKVSRKAKQYPRCFII 234


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 LV*GI-LLIMFILLEGLATVTHFTHRYQHLLVVFKLVIDFLILSYTSLLSCF 478
           L+ GI L + F   E       F H  +   ++F   IDF + S     +C+
Sbjct: 47  LIKGIPLFLFFFFFESFLLPLSFAHLIKQRKLIFNKAIDFKLNSLCCSFTCY 98


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 395 HRYQHLLVVFKLVIDFLILSYTSLLS 472
           +R ++ L+VF L+I  LILS  +++S
Sbjct: 577 YRNRYKLIVFNLLIALLILSILTIIS 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,509
Number of Sequences: 5004
Number of extensions: 30951
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)