Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G11
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    29   2.0  
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351...    28   4.6  
10_08_0130 - 15032348-15033338,15033459-15033517                       28   6.1  

>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 182 LISLRDLMMXYGNTDAAKAEKDTDEVKDEGFVISLKAKQIRTFVIS 319
           L+S+    + + N DAAK +KDT E        S  A Q+ T++ S
Sbjct: 144 LLSMPQRDVEFFNNDAAKDDKDTTESSLSNTDSSASALQVTTYIAS 189


>07_01_0465 +
           3513296-3513631,3514386-3514442,3515196-3515306,
           3515466-3515552,3515627-3515740,3515850-3516056,
           3516291-3516428,3516691-3516852,3516939-3517138,
           3517429-3517554,3517644-3517785
          Length = 559

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 137 NQWAGDKRWSWKTEXLISLRDLMMXYGNTDAAKAEKDTDE 256
           NQWA   RW  +T+  I   + +   G+T  A  E+   E
Sbjct: 196 NQWANVTRWEMRTKPFIRTLEFLWQEGHTAHATLEEAEKE 235


>10_08_0130 - 15032348-15033338,15033459-15033517
          Length = 349

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 295 ADTHFCYKLRVGVRDFINYVYFIGGVSNCYSF 390
           AD H CY LR    DF+N    +  + N   F
Sbjct: 272 ADKHHCYGLREACFDFLNSSAILSAIVNTSDF 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,044
Number of Sequences: 37544
Number of extensions: 184935
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)