Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G11
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    28   4.1  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 313 YKLRVGVRDFINYVYFIGGVSNCYSFYPSLPASACGL*AGD*FLNP 450
           +K+RVG  + ++    + GV +C S+ P L   AC +   D F  P
Sbjct: 697 FKIRVGKENCVDAADPVNGVQSCESWGPQLKYKACSVECRDGFEFP 742


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 272 FVISLKAKQIRTFVISYELV*GILLIMFILLEGLATVTHFTHRYQHLLVVFK 427
           F   LKA  I TF I+Y       L++F+L      +  F H  + +L+++K
Sbjct: 92  FNFPLKALNISTFYIAYVSTQTFHLLIFLLAAERFVLFFFPHTEKSILILWK 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,991
Number of Sequences: 27780
Number of extensions: 170577
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)