Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G10
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   1.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   3.8  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    24   8.7  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 143 AGYPKTGQKDSCQGDSGGPLIAERKHDKRYELIGVVSW 256
           AG+  TG+K  C   +   L   + H+K+  L G+ +W
Sbjct: 73  AGFVDTGEKPPCSYATLIGLAILQSHNKQLTLSGIYTW 110


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 271 GAAVTPRNYTY*LIAFV-VFSLRDKRSSTITLARILLTSFRIPGAEHIL 128
           G  +T  + ++ L AF+  F  + KR       R+LL SFR+PG   ++
Sbjct: 601 GEFLTKGSNSHILNAFISAFDFKGKRIDEAL--RLLLQSFRLPGESQLI 647


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 HDKRYELIGVVSWGNGCARPGYPGVYTTS 304
           +D R+  + +++  NGC+   YPG +  S
Sbjct: 196 YDIRFPELAMIAARNGCSVMIYPGAFNLS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,545
Number of Sequences: 5004
Number of extensions: 32308
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)