Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G10
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 32 0.17
10_02_0188 - 6473353-6473432,6473619-6474816 29 1.6
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 29 1.6
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 28 2.8
08_02_1168 + 24853895-24854216,24854264-24854286,24856102-248561... 27 4.9
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 27 4.9
01_06_1615 - 38652493-38652668,38652896-38653043,38653125-386533... 27 4.9
06_02_0035 + 10816723-10819497,10819964-10820011 27 6.4
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544... 27 6.4
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 27 8.5
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 27 8.5
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 32.3 bits (70), Expect = 0.17
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 20 TLSEEGKVSCTLQEVEVPVISNEECRNTKYSASMITKNMLCAGYPKTGQKDS 175
T G+V+ ++EV++ + EE + TK + + + G+ KTG KDS
Sbjct: 748 TDDNHGRVAVQVEEVKLMISGREETKKTKKGQTDLVDSEEDVGHAKTGCKDS 799
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 29.1 bits (62), Expect = 1.6
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +2
Query: 20 TLSEEGKVSCTLQEVEVPVISNEECRNTKYSASMITKNMLCAGYPKTGQKDSCQGDSGGP 199
T E K+ T E P ++ + RNT A +T+++L G + +DS Q S
Sbjct: 126 TEDEVRKMIITSTEWPPPGMTRRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSDDE 185
Query: 200 LIAERKHDKRYELIGVVSWGNGCA 271
ERK R IG V+ + CA
Sbjct: 186 DEMERKACSRCGEIGHVA--SSCA 207
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 29.1 bits (62), Expect = 1.6
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +2
Query: 20 TLSEEGKVSCTLQEVEVPVISNEECRNTKYSASMITKNMLCAGYPKTGQKDSCQGDSGGP 199
T E K+ T E P ++ + RNT A +T+++L G + +DS Q S
Sbjct: 126 TEDEVRKMIITSTEWPPPGMTKRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSDDE 185
Query: 200 LIAERKHDKRYELIGVVSWGNGCA 271
ERK R IG V+ + CA
Sbjct: 186 DEMERKACSRCGEIGHVA--SSCA 207
>03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 252 LGVTAAPDRVILAFTQRVTRLAYNLGLQEKHTKGRVLLQ*L--NSYSVFYFKLKNK 413
+ + P VI A Q++ ++ G+QE H K ++L+ N Y+V F NK
Sbjct: 986 VALATLPVLVISAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNK 1041
>08_02_1168 +
24853895-24854216,24854264-24854286,24856102-24856181,
24856286-24856369,24856843-24857074
Length = 246
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 116 SMITKNMLCAGYPKTGQKDSCQGDSGGPLIAERKHDKRYELIGVVS 253
S T AG ++G DS GD GG L A ++ K E+I +S
Sbjct: 82 SPATAGKTAAGLGQSGDDDSGDGDDGGSLSARVRYCK--EVIASIS 125
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 122 ITKNMLCAGYPKTGQKDSCQGDSGGPLIAE 211
+ +NM C PK G+K G+ GG AE
Sbjct: 174 LVENMSCFKCPKCGEKSYIFGEGGGQRTAE 203
>01_06_1615 -
38652493-38652668,38652896-38653043,38653125-38653340,
38653572-38653701,38653801-38653823,38654238-38654292,
38654370-38654428,38654516-38654569
Length = 286
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 29 EEGKVSCTLQEVEVPVISNEECRNTKYSASMITKNMLC 142
+ GK+ L +V V EECR ++ A++ TK C
Sbjct: 165 KSGKIKMKLGDVMFDVNPGEECRMAQHVAAINTKEKHC 202
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 113 ASMITKNMLCAGYPKTGQ--KDSCQGDSGGPLIAERKHDKRYEL 238
A++IT AG G +D G SGG LI H KRY++
Sbjct: 445 ATLITTVTYQAGLDPPGGVWRDDDNGHSGGGLILPATHAKRYKV 488
>01_05_0474 -
22552599-22552687,22553494-22553631,22553766-22554447,
22555120-22555167,22555395-22556042,22556960-22557310,
22558622-22558690
Length = 674
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 141 APGILKLVKRILAKVIVEDLLSRRENTT 224
+P +LK +K ++ D LSRRE TT
Sbjct: 510 SPAVLKPIKNVILHEKYVDRLSRREGTT 537
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 294 TQRVTRLAYNLGLQEKHTKGRVLLQ*LNSYSVFYFK 401
T ++ +NL L E H KG + L +SY F+ +
Sbjct: 376 TSNSKKMKFNLDLSEPHVKGCLELLFSSSYKTFHHR 411
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +2
Query: 161 GQKDSCQGDSGGPLIAERKHDKRYELIGVVSWGNGCARPGYPGVYTTSY*TSLQLGTPRE 340
G+ D G G + K R E +G + WG G G G + + L P E
Sbjct: 17 GEGDGKMGSGGEEAEVKGKGQGRKEALGWLEWGRGWM--GIVGEFLFQRIAASNLSNPLE 74
Query: 341 TYKRTGVTAVI 373
GV+ V+
Sbjct: 75 LPPLDGVSFVV 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,814
Number of Sequences: 37544
Number of extensions: 225742
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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