Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G09
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   4.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   5.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.3  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.3  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    24   9.7  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    24   9.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   9.7  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    24   9.7  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    24   9.7  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    24   9.7  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 78  SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 230
           S+ SS             P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 215 LVKVKL-VPYGKSTHDKVNEKW 277
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +3

Query: 78  SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARM 257
           S VSS               +  P++ +  SSS  S + S  +   S+ +S      +  
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429

Query: 258 TR*MKSGLSRAITDLTN 308
           +R      S +++ L++
Sbjct: 430 SRSSSHSSSHSLSSLSS 446


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 332 CILKDRSLQDTEKMELVICLMSQASPDKSLDTCLIQVNKQNE 457
           CI+K  +L+ +E + L++C  S    +  LD  L++V + +E
Sbjct: 23  CIVKFTNLRSSEDVNLLLCYAS-IHGEMYLDYVLVRVTEFDE 63


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 164 KKFITTQLAPVWRDFRGLVKVKLVPY 241
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 275 WTFTCHHGPDE---CYGNKMQACILKDRSLQDTEKMELV 382
           W  TC   P       G     C++ D S+ D + +ELV
Sbjct: 65  WIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDADPVELV 103


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 182 QLAPVWRDFRGLV-KVKLVPYGKSTHDKVNEKWTFTCHH 295
           QL  + R   GLV KV LVPY  S+    ++ W    H+
Sbjct: 234 QLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQKHY 272


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 311 YGNKMQACILKDRSLQDTEKMELVI--CLMSQASPDKS 418
           Y ++ Q CI +DR+L    + EL I   L S++ P  S
Sbjct: 149 YDSQHQLCIEEDRTLAYLNRQELAIPKTLRSKSIPQHS 186


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 229 LNLDESSEVPPDGRQLCRDELLTV 158
           L+LDE +  P DGR + +D  L V
Sbjct: 288 LHLDEGTICPADGRLITKDCFLQV 311


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 355 EAAVLEDACLHLISVAFVRSVMARESPLFIHLVMRALSIRHQLNLDES 212
           E  +    CL ++   ++  V    SPLFI    R  ++ H     E+
Sbjct: 31  ELRLFSPQCLFIVYFFYLLHVRINTSPLFIKTTTRPTALIHITKYSEA 78


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -3

Query: 412 VRARLRHQADNQFHLLRILEAAVLEDACLHLISVAFVRSVMARESPLFIHLVMRALSIRH 233
           VR+ LRH  +N F+ + I       D    L + A   S + + SP +  +      I  
Sbjct: 242 VRSILRHAINNSFNSISIDGDTSTNDTIAFLANGAAGGSEITKSSPAYKEIRDAVTDIAQ 301

Query: 232 QL 227
           QL
Sbjct: 302 QL 303


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 361 YGEDGTGYLLDVSGEPGQIFGYVPNSSE 444
           YG+ GTG    V G  GQ  G +P+ SE
Sbjct: 106 YGQKGTGKTYSVVGLRGQP-GIIPHISE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,187
Number of Sequences: 5004
Number of extensions: 33983
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)