Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G09
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    65   2e-11
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    61   4e-10
03_02_0673 - 10328994-10329281                                         48   5e-06
05_01_0258 + 1984666-1984878,1985019-1985852                           30   0.78 
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814...    29   1.8  
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    28   3.1  
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393...    27   9.6  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
 Frame = +2

Query: 29  ALYKMKLLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD- 205
           A+ + +  LL+ A+ ++     + KK    KV +A+YYESLCP S  F+   LA V+RD 
Sbjct: 3   AIRRFRPALLLAAILLLAAGAVEGKKGG--KVDVALYYESLCPYSAMFVVGSLAKVFRDG 60

Query: 206 FRGLVKVKLVPYGKSTHDKVNE-KWTFTCHHGPDECYGNKMQACIL 340
               V + LVPYG +   +V + K +    HG +EC+ N ++AC +
Sbjct: 61  LLDAVDLSLVPYGNA---RVKDGKISCQVEHGSEECFLNTVEACAI 103


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
 Frame = +2

Query: 128 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPD 304
           ++VYYE+LCP    F+   LA ++RD    +V ++LVP+G   + +V+   + TC HG +
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57

Query: 305 ECYGNKMQACILK 343
           EC  N ++AC+++
Sbjct: 58  ECQLNAIEACVIR 70


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +2

Query: 38  KMKLLLLICAVTMICGVLAKN---KKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD- 205
           ++ L+ L+ A  ++ G L           +KV +A+YYE+LCP   +FI   LA ++ D 
Sbjct: 8   RLLLVALVSAAAVVAGALLPGCAAAAAAGEKVPLALYYETLCPYCSRFIVNHLAGIFEDG 67

Query: 206 FRGLVKVKLVPYGKS 250
               V ++LVPYG +
Sbjct: 68  IVDAVDLRLVPYGNA 82


>05_01_0258 + 1984666-1984878,1985019-1985852
          Length = 348

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 47  LLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 214
           ++ L+C V ++    A      D+++K+  YYE  C D +K + + +    +D RG
Sbjct: 1   MVKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55


>10_08_0372 +
           17280560-17280811,17280901-17281065,17281305-17281410,
           17281432-17281487,17281607-17282201,17282863-17282975,
           17283106-17283326,17284113-17284437
          Length = 610

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
 Frame = +2

Query: 137 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKLVPYGKSTHDKVNEKWTFTC- 289
           +YE  CP  ++ +   + P         W   R +V    +P+    H+K ++ W     
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175

Query: 290 -----HHGPDECYGNKMQACILKDRSLQDTEKMELVI 385
                HHG D+   N       KD ++ +   +  V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212


>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 238 RHQLNLDESSEVPP---DGRQLCRDELLTVRAEG 146
           RH+   D SSE PP   DG  + RDE  T R  G
Sbjct: 175 RHRCRADPSSESPPATADGIYVPRDEAFTERRAG 208


>07_01_0532 -
           3935661-3935720,3936314-3936412,3937804-3937908,
           3939474-3939666,3940434-3940513,3940607-3940904,
           3941139-3941431
          Length = 375

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 412 VRARLRHQADNQFHLLRILEAAVLEDACLHLISVAFVRSVMARESPLFIHLVMRAL 245
           V ARLRH+AD  + L    +A    D C      + +R+  A  +P  + +V  AL
Sbjct: 28  VPARLRHRADQAYALQG--DAGATGDPCYQGRRKSHLRAAAATSTPADLRVVEPAL 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,392,500
Number of Sequences: 37544
Number of extensions: 243445
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)