Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G09
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.91 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   4.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   6.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   6.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 LAPVWRDFRGLVKVKLVPYGKSTHDKV 265
           L  VW D++G+V  +L+P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 25  LRIVQDEAIIIDMRCDHDLRCP 90
           LRI QD  I+  MR     +CP
Sbjct: 142 LRISQDGDILYSMRLTIKAKCP 163


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 194 VWRDFRGLVKVKLVPYGKSTHDKV 265
           VW D +G+V  +L+P  ++ +  V
Sbjct: 71  VWWDHKGIVYFELLPPNRTINSVV 94


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 23  GCALYKMKLLLLICAVTMICGVLAKNKKTDDQ 118
           G A+    +  LI  V +ICG +++ +K DD+
Sbjct: 410 GIAIVSGLITGLIMRV-LICGSISEEQKFDDE 440


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 209 RGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPDECY 313
           + LV   L P       K  ++WTFT   G D  Y
Sbjct: 24  QNLVNTVLQPRPSFELSKNGDEWTFTSSSG-DNTY 57


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 209 RGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPDECY 313
           + LV   L P       K  ++WTFT   G D  Y
Sbjct: 26  QNLVNTVLQPRPSFELSKNGDEWTFTSSSG-DNTY 59


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 185 LAPVWRDFRGLVKVKLVPYGKSTHDKV 265
           L  VW D++G+V  +L+   ++ +  V
Sbjct: 67  LLSVWWDYKGIVYFELLSPNRTINSVV 93


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 311 YGNKMQACILKDRSLQDTEKMELVICLMSQAS 406
           YG K+  C L   +    + MEL I   S +S
Sbjct: 255 YGEKVYKCTLCHETFGSKKTMELHIKTHSDSS 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,841
Number of Sequences: 438
Number of extensions: 2460
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)