Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G08
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    54   4e-08
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    54   4e-08
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    32   0.20 
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    29   1.8  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    27   9.8  
01_02_0081 + 10943368-10943787                                         27   9.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = -1

Query: 466 IGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 359
           IG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = -1

Query: 466 IGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRD 359
           IG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 396 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQLHHGLK 229
           VGM+  T S +  LK +    NKL   +  L  W    Q++R  +  + Q+  GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = +1

Query: 253 QHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVS 429
           QH Q  P     ALP        P  ++  + S   H    SQ Q P + H   HH  S
Sbjct: 120 QHQQQTPQAALQALPPPNSTASSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGS 178


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 359 VTIEEQVNDNIPTLVTTKNTTESQYFTC*QPPH 457
           V  + Q   NIP LVT+ +TT+ + F    PPH
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPH 491


>01_02_0081 + 10943368-10943787
          Length = 139

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
 Frame = +2

Query: 185 GCTKCSRSSGC-RCCIFSP*C-----NWFNILNPF-LMNW 283
           GC  C R  GC  C  + P C     +W  I+ P  L NW
Sbjct: 82  GCDGCGRGGGCDGCGRYPPMCEDEPSSWVRIVAPLDLANW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,103
Number of Sequences: 37544
Number of extensions: 181993
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)